Gene Lferr_2552 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_2552 
Symbol 
ID6878551 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp2525412 
End bp2527775 
Gene Length2364 bp 
Protein Length787 aa 
Translation table11 
GC content54% 
IMG OID642790409 
ProductTonB-dependent receptor 
Protein accessionYP_002220953 
Protein GI198284632 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value6.91451e-05 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.635758 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATAAGC GGAATCGTAT GAACCCGTTA TTGTTCGCAA TGTGCACCGC AGGGTTTTGC 
ACCTGGAATA CCATAACAGC AGCTTATGGT GCCAATTCAG GCAGCCAATC CACCAGTGTC
GGCGAGGTAA ACGCTTCGGC CAGCGCACTT TCTGAATCTG CCAAGGCGCT GGCCAGCACT
GACGGCAAGC TGACCAGGAA GAAAATCTTC AAATCCACCC AATCCCAGGC GGTTGTCGGG
AAGCGTGAAA TTCAGGGTGT AGGTCCCGCC GCAGGGGCGG CCCAGGCACT CTCTCTGGCA
CCCGGCATCG CCGTTCGTGG TTATGGCGGC ATCTCCTCGA CCGCGCGCTA TGAAATCGCG
GTGCGCGGCG TAAAGGTAGG CTGGTCATCC GTGAATGGCG ACGTCGAACG CAATGGCTTG
ACGGTGCTGT TTGACGGAAT CCCCATGAAC AACCTGATTT CACATAACGG CGGCTGGGAT
TCCAACGAAA TCCCCATTCT CCAGATGATC CATGGCATCA ACGTGACCTA CGGCCCCGGA
AATCCCGCCG GCCGGTGGTT CGACAGCGTC GGTGGCACCA TCAACTTTGT GCCGCTGCAG
CCATCCGTAA AACCGAGCGC CGAGATAGGT ACCACCTTTG GCAGTAACGG CACCCTCGGC
TACAACTTCG ATCTCAAAAC GGGAATGTAC GATGGCTGGT CCGCGATCCT GGCCGGAGGT
TATACGAAAA ACAATACGTT CCGCACAGGT ACGTTCAATG CGCCGTCCCA GTCTCTCGCC
TATTTTGGCA AGGCGGTGAA GACCTTCCGG AGTGGCACCT TCAGCCTTGG CGGCTATGTC
GACAGTTCGC GCGAGTTCAG GCCCAATTTC ATACCGGTTA CCCCGATACA GGGCATCACC
ACCCAGGGCC TGAACGCCAA TGCGCCTTTG TATAGCCAAC AGACCAGCGG GTTTTACGCA
TCACTGCCTG AGTCCATCTG GTTTAAGCAA TTGAAAGTGC AAGGCTACAT GCTGTACTCC
AAGCTGAACC TCCGCCTCAG CAGGGACGTC ACGCTGCACG AAATGGCCTG GTATCGCCAT
GGCCACCGGG TGCATTACCG CATCACCAAC TTTGTACCAG GAAGCAGCGT AAATTCCGAG
TATTACAACC CGAGCTCGGA TACTTATGGG GACAAGCTGT ATTTCGACTG GCGCCTGCCT
ATGAACCTCG TGAAGGCCGG AGGGTCATGG ATTCATCAGC AATACACCAC ACCTTATGCG
GGATACAATA CGCTTCTGGG CACCAGTCCC TCCTTCCCCA TTCAGTACAA TAGTGACGTT
CTGTATAACA ACTATCTGAC AGGCTTCGTT CAGGACACGT TCACTCCGTT CTCCGGCTTC
AAGATTACTC CGGGCATTGC TGCGGTCCAG TACCAGACCC AGATGTACAA TAATGGGGCC
CAGGCATTCC CCAACCTTCC GGCGGGCGCG CAGAATCAGA CGCTCATTAA TAGCGCTTCG
GATACCATAT CCCGCTTGGA ACCTTCCATC GGGGTCCGCT TTGCACCGGT CAAATGGGGT
TCGGTATATG CGCACTATGG CCGTTCTTAT CAGAATCCTA CGGATAACAA CTACGGGGCC
TACAATGGTA ACGGCGGCAC CATAGATCTA AACAGCCTGA AACCGGTAAA AAGTACGGAT
TACGAAGTCG GCGCCAAGTT TTTAGTACAC AACTGGATGT TGTTGCATAA CTTTACATTC
AACGTCAACT ACTACCACGA CAGTCTCGCC AACGAAACCA TCGCGACCTT CCTGTCAAAC
ATCTCCCAAA CCAAGTTCGC CGCGGCCGAT GCGGTGGTGA ACGGCGTCAA TATCGCGATG
GCCGACAACC CCTCCTGGAA CTGGCATCTG TTCGCCAATC TGGCGCTCAA TCATTCGTAC
TACACCTCGT ATACGCCGCA GGGTGGAGGT ACGACCTTGT ATGGCGCCAA CGTATCTTAT
AGCCCGTACC TCACCATGAG CGCGGGTATT GACTATCGCT ACTATTATCA TGGATTCCTT
TTCTCGCCCC AGTTTGTGGA TCAATACACA AGCTCGGAGT ATCTATTCAA CAACGGGACC
GGCGCGCCAT CGCACCAGAA GCAGCCGGGA TACAATGTCT CCAACCTCAG CCTTGGGATA
AAAACGACCC GATTGAATCC ATACATCCCG ACACTGAAAG ATGTGAAGCT CTCCGTGGGA
ATATACAATC TCTTTGATGC GCGCTATAAC CCCATTGAGT ACATCACCAG TGGTGGATAC
TTCGGTGGCA ACAGTGCCGG CGCCATTCTG GCTGATCCGG GGGCCCCACG GCAGTATTTT
ATGACGGTAT CGGCGAAGTT CTAA
 
Protein sequence
MNKRNRMNPL LFAMCTAGFC TWNTITAAYG ANSGSQSTSV GEVNASASAL SESAKALAST 
DGKLTRKKIF KSTQSQAVVG KREIQGVGPA AGAAQALSLA PGIAVRGYGG ISSTARYEIA
VRGVKVGWSS VNGDVERNGL TVLFDGIPMN NLISHNGGWD SNEIPILQMI HGINVTYGPG
NPAGRWFDSV GGTINFVPLQ PSVKPSAEIG TTFGSNGTLG YNFDLKTGMY DGWSAILAGG
YTKNNTFRTG TFNAPSQSLA YFGKAVKTFR SGTFSLGGYV DSSREFRPNF IPVTPIQGIT
TQGLNANAPL YSQQTSGFYA SLPESIWFKQ LKVQGYMLYS KLNLRLSRDV TLHEMAWYRH
GHRVHYRITN FVPGSSVNSE YYNPSSDTYG DKLYFDWRLP MNLVKAGGSW IHQQYTTPYA
GYNTLLGTSP SFPIQYNSDV LYNNYLTGFV QDTFTPFSGF KITPGIAAVQ YQTQMYNNGA
QAFPNLPAGA QNQTLINSAS DTISRLEPSI GVRFAPVKWG SVYAHYGRSY QNPTDNNYGA
YNGNGGTIDL NSLKPVKSTD YEVGAKFLVH NWMLLHNFTF NVNYYHDSLA NETIATFLSN
ISQTKFAAAD AVVNGVNIAM ADNPSWNWHL FANLALNHSY YTSYTPQGGG TTLYGANVSY
SPYLTMSAGI DYRYYYHGFL FSPQFVDQYT SSEYLFNNGT GAPSHQKQPG YNVSNLSLGI
KTTRLNPYIP TLKDVKLSVG IYNLFDARYN PIEYITSGGY FGGNSAGAIL ADPGAPRQYF
MTVSAKF