Gene Lferr_2383 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_2383 
Symbol 
ID6878379 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp2354572 
End bp2355228 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content65% 
IMG OID642790244 
Productouter membrane lipoprotein LolB 
Protein accessionYP_002220791 
Protein GI198284470 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3017] Outer membrane lipoprotein involved in outer membrane biogenesis 
TIGRFAM ID[TIGR00548] outer membrane lipoprotein LolB 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.571518 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGGATTC TCCACGCCAT GCCACCCACC CGGCTTCGGT CCCGGAGCAC CGCTCGCACA 
CTGGCCGCAC TCCTGCTTAC CGGTGTGCTG TCCGCCTGTG CGACCACCCC TCCCGTTTCA
CCATCCCCCA GGGTCATCCT GCCGACCGCC GAGAGAAACC AGGTCGTCGC CAGCCTGAAA
CAGTGGCAGG CCAGCGGCCA GGCAGCACTC AGCACCCCCA AAAGCAGTGA AGACTTCGGA
TTCGACTGGA AGCAGTCTCC CGGGCGCCAG GAGTTCTCCG TTTACGACCC CCTCGGCCGC
ACGGTCGCCC GCATTACCGT TGATCCCCGA GGCGCGCACC TGCAACTGGC CAATGGAGAT
ATCCGGCAGG CGGATACTCT GGAGGCGCTC CTTGCGCTGG TCCTCCATGT TGATCTGCCG
GCGAATGAGT TGCCGGACTG GATGCTTGGC CTGCGCCGCG GTACGGCGAC TGAGCAGCAG
AATGCCGCAG GCCTGCCCGA AGTCCTGCGC AGCGGCCCCT GGCGGATCCA ATATCTCCAA
TATGCGCCGG TAGGCGGCCT CACCATGCCC AAGCTGCTCC AGGCCACGGG GCCGGAGGGC
ATCACCCTAC GCCTGGCCAT CACCCAATGG CGTATGGGGG AACCTGGCAC TCCATGA
 
Protein sequence
MRILHAMPPT RLRSRSTART LAALLLTGVL SACATTPPVS PSPRVILPTA ERNQVVASLK 
QWQASGQAAL STPKSSEDFG FDWKQSPGRQ EFSVYDPLGR TVARITVDPR GAHLQLANGD
IRQADTLEAL LALVLHVDLP ANELPDWMLG LRRGTATEQQ NAAGLPEVLR SGPWRIQYLQ
YAPVGGLTMP KLLQATGPEG ITLRLAITQW RMGEPGTP