Gene Lferr_2324 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_2324 
Symbol 
ID6878318 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp2301374 
End bp2302708 
Gene Length1335 bp 
Protein Length444 aa 
Translation table11 
GC content62% 
IMG OID642790183 
Producttype II secretion system protein E 
Protein accessionYP_002220732 
Protein GI198284411 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4962] Flp pilus assembly protein, ATPase CpaF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGACG ACAGTCCCTT TGGCGCGCAG CCTTTCGATA TGGCCACCGC GAAGGCGTTG 
AACCAGCAGG ATGCCTACCA GCAGTTCAAA GGCTATCTGC ATCTGCGGCT CATCGACCGG
GTCGAAGAGA TCGGCGCCGA TTTCGCGGAG CTGAGTCGTG GCGCCGTCTA TCGTTTCGTC
TCGCTGGAAC TGGACCGCCT GATGCCGGAG CGCCCCTATC CGCTGAACGA AAAAGAAACC
GAGGTGCTCA TCAACCAGCT CACCGACGAG CTGACTGGCT ACGGCCCGCT GGAAACGGCG
CTCAAGGATC CCGAGGTCGA AGATATTCTG GTGAACGGAC CTCGTGAAAT CTATCTGGGA
CGGAAAGGTA CGCTGGAGCA CAGTGATCTG GTGTTTCAGG ATGAAGCCCA TCTGATGCGT
ATCATCTATC GTCTGTTGGG CGCCACCGGC AGACGGGTGG ACGAGTCGTC GCCGACCGTG
GACGCGCGTC TGAGCAACGT GGGGCGCATC AATGTCGTGA TTCCGCCCCT GGCCCTGAAC
GGACCGGTCA TTTCCATCCG GCGTTTCCCG GCACATCCGC TGCGCGCCGA GGATCTGATC
GAGAAGGCCA CGCTCAATGC GCCCATCCTC CAGTTTCTGG AGTTCGCGGT GCGCGCGCGC
TGCAACATCC TGGTATCCGG CGGCACCAGC AGCGGCAAGA CCACCTTCCT CAACGTCATC
GCCAGCTTTA TCTCCGATGA GGAGCGGGTG GTGACCATCG AAGACACCGC GGAACTGCAA
CTGCAGAGCA GGCATGTGGT GCGTCTGGAA AGCCGTCCCG GCGGGCATGA CGGGGCGGGC
ACCGTCAACG TTCGCGATCT GCTGCGCAAC ACCCTGCGCA TGCGCCCCGA CCGGATCGTC
GTCGGCGAGG TGCGCGGCGG CGAGGCCCTG GAGATGATGC AGGCCATGAC CACCGGCCAT
GATGGTTCAC TGGGCACGAT CCACGCCAAC TCCCCCCGGG AGGCCTTGCA GCGCCTGGAA
ATCCTGCTCA GCTTCGGCGG TTTTCCGGGC AATGAATCCA GCATGCGGCG GCAGATCGCT
TCGGCCATCG ACCTCATCGT CCAGATCGAG CGTTTTCCCG ACGGGCGGCG CCGCATCACC
TCCGTCACCG AAGTGACCGG CGTCGGCGAC AACATCATCG CCACCCAGGA GCATTTCCGT
TACGAACCCC AGGTGAACCG GGAAAACAAG ACGGTCGACC GCTGGATATC CACGGGGATC
AATCCGCGCA GTCCGAAACT CGCCAAGTAT CGTCCCGAAT CCTCCGAGAA GGATCAGTTC
GGGTGGCTGG AATGA
 
Protein sequence
MTDDSPFGAQ PFDMATAKAL NQQDAYQQFK GYLHLRLIDR VEEIGADFAE LSRGAVYRFV 
SLELDRLMPE RPYPLNEKET EVLINQLTDE LTGYGPLETA LKDPEVEDIL VNGPREIYLG
RKGTLEHSDL VFQDEAHLMR IIYRLLGATG RRVDESSPTV DARLSNVGRI NVVIPPLALN
GPVISIRRFP AHPLRAEDLI EKATLNAPIL QFLEFAVRAR CNILVSGGTS SGKTTFLNVI
ASFISDEERV VTIEDTAELQ LQSRHVVRLE SRPGGHDGAG TVNVRDLLRN TLRMRPDRIV
VGEVRGGEAL EMMQAMTTGH DGSLGTIHAN SPREALQRLE ILLSFGGFPG NESSMRRQIA
SAIDLIVQIE RFPDGRRRIT SVTEVTGVGD NIIATQEHFR YEPQVNRENK TVDRWISTGI
NPRSPKLAKY RPESSEKDQF GWLE