| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_2291 |
|---|
| Symbol | |
|---|
| ID | 6878285 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | - |
|---|
| Start bp | 2261812 |
|---|
| End bp | 2263716 |
|---|
| Gene Length | 1905 bp |
|---|
| Protein Length | 634 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 642790150 |
|---|
| Product | chaperone protein DnaK |
|---|
| Protein accession | YP_002220699 |
|---|
| Protein GI | 198284378 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0443] Molecular chaperone |
|---|
| TIGRFAM ID | [TIGR02350] chaperone protein DnaK |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.00759352 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAAAG TGATCGGAAT TGATTTGGGA ACCACCAACT CCTGCGTTGC CGTGATGGAA
GGCGACAAGG TCAAGGTGAT CGAGAACAGC GAAGGCAAGC GCACCACGCC GTCTATCGTC
GCCATCACCG AAGAGGGCGA AGTGTTGGTG GGTGAAGCGG CCAAGCGCCA GGCCGTCACC
AATCCGGAAA ATACCGTTTA TGAGGTCAAA CGCCTGATCG GCCGCAAGTT CGACGATGCC
GAGGTCCAGA AGGATCTCAA GCATGTGCCT TACAAGGTCA TCAAGGCCGA CAACGGCGAC
GCCTGGGTGG AAGTGCGCGA TAAGAAGTAT TCCGCGCAGC AGATTTCTGC CTTCATCCTG
CAGAAGATGA AGAAGACGGC CGAAGATTAT CTTGGTGAAA AAGTCACCGA AGCGGTCATC
ACCGTACCCG CCTACTTCAA CGATGCACAG CGTCAGGCGA CCAAGGATGC GGGCCGTATC
GCTGGTCTGG AGGTCAAGCG CATCATCAAT GAACCCACTG CGGCGGCGCT GGCCTTTGGC
GAAGACAAGA AGCCCGGCGA CAGCAAAATT GCGGTGTATG ACCTGGGTGG CGGCACCTTC
GACATCTCCA TCATCGAGAT CGCTGAAATG GAGGGTGAAC ACCAGTTTGA AGTGCTCTCC
ACCAATGGTG ACACCTTCCT CGGTGGCGGT GATTTTGACT CCCGCGTCAT CAACTACCTG
GCAGATTCCT TCAAAGCGGA ATCGGGTATC GATCTGCGCG GCGACCGTCT GGCCATGCAG
CGCCTGAAGG AAGCTGCGGA GAAGGCGAAG ATCGAGTTGT CTTCGGCGCA GCAGACCGAC
GTCAATCTGC CCTTTATCAC GGCGGATCAG AGCGGGCCGA AGCATCTGAA CATGAAGCTG
ACCCGCGCCA AACTGGAGTC GCTGGTGGAA GATTTGATCG ACCGCAGCAT GGCGCCCTGC
CGAGTGGCCA TGAAGGACGC CAATCTGGCG ACGAGCCGGA TCACCGACGT GATTCTGGTG
GGCGGCCAGA GCCGGATGCC CAAGGTGCAG GAGAAGGTCA AAGACTTCTT CGGTCAGGAT
CCGCGTAAGG ATGTGAACCC TGACGAGGCA GTGGCCATCG GTGCGGCCAT CCAGGGCGCG
GTGTTGTCCG GTGAAAAGAA AGACGTGCTG TTGATGGATG TGACGCCGTT GTCCCTTGGC
ATCGAGACCC TGGGTGGCGT GATGACCAAG CTGATCGAGA AGAACACCAC CATCCCGACC
CGCAAGTCGC AGATTTTCTC GACGGCGGAA GATAACCAGT CGGCGGTGAC GGTGCATGTG
TTGCAGGGTG AGCGCGAACT GGCGCGGGAT AACAAGTCCC TGGCGCGTTT TGATCTGACC
GATATTGCCA ACGCCCCACG GGGCATGCCG CAGATCGAAG TGACCTTCGA CATCGACGCC
AACGGTATCC TCCATGTCTC GGCCAAGGAC AATCAGACCG GCAAGGAGCA GTCCATCAAG
ATCACCGCAA GCTCTGGTCT GTCCGAGGAA GAAATCAAGC GGATGATTCA GGAGGCCGAG
GCCCACGCTG CGGATGACAA GAAGGCGCGT GCGCTGATCG AGGCACGTAA CGAGGCGGAC
GCCAGCGTGC ACGGCGCGCG CAAGGCGGTG GAGGAACATG CCGCGGCACC TGAGCACGAC
AAGACCAAGG TGACGGAAGC GATCTCCGCG GTGGAAAACG CCGCCAAGGG TGAGGACGTG
GAAGCGATCA AGGGGGCTGT CGCCACTCTG ATGGCCGCCA TGTCGGCATT GTTGCAGAGT
GCCGCTGCCG GTCAGGCCCA GGCAGAATCC GGTGCGGGTG CCCAGGGCAA TGCCAAGCCG
GACGACGTGG TGGATGCCGA GTTCGAAGAA GTCGACAAGA AGTAA
|
|---|
| Protein sequence | MAKVIGIDLG TTNSCVAVME GDKVKVIENS EGKRTTPSIV AITEEGEVLV GEAAKRQAVT
NPENTVYEVK RLIGRKFDDA EVQKDLKHVP YKVIKADNGD AWVEVRDKKY SAQQISAFIL
QKMKKTAEDY LGEKVTEAVI TVPAYFNDAQ RQATKDAGRI AGLEVKRIIN EPTAAALAFG
EDKKPGDSKI AVYDLGGGTF DISIIEIAEM EGEHQFEVLS TNGDTFLGGG DFDSRVINYL
ADSFKAESGI DLRGDRLAMQ RLKEAAEKAK IELSSAQQTD VNLPFITADQ SGPKHLNMKL
TRAKLESLVE DLIDRSMAPC RVAMKDANLA TSRITDVILV GGQSRMPKVQ EKVKDFFGQD
PRKDVNPDEA VAIGAAIQGA VLSGEKKDVL LMDVTPLSLG IETLGGVMTK LIEKNTTIPT
RKSQIFSTAE DNQSAVTVHV LQGERELARD NKSLARFDLT DIANAPRGMP QIEVTFDIDA
NGILHVSAKD NQTGKEQSIK ITASSGLSEE EIKRMIQEAE AHAADDKKAR ALIEARNEAD
ASVHGARKAV EEHAAAPEHD KTKVTEAISA VENAAKGEDV EAIKGAVATL MAAMSALLQS
AAAGQAQAES GAGAQGNAKP DDVVDAEFEE VDKK
|
|---|
| |