| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_2196 |
|---|
| Symbol | |
|---|
| ID | 6878187 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | + |
|---|
| Start bp | 2175715 |
|---|
| End bp | 2176809 |
|---|
| Gene Length | 1095 bp |
|---|
| Protein Length | 364 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 642790054 |
|---|
| Product | rod shape-determining protein RodA |
|---|
| Protein accession | YP_002220606 |
|---|
| Protein GI | 198284285 |
|---|
| COG category | [D] Cell cycle control, cell division, chromosome partitioning |
|---|
| COG ID | [COG0772] Bacterial cell division membrane protein |
|---|
| TIGRFAM ID | [TIGR02210] rod shape-determining protein RodA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.00465004 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTGGC ACACACGCCT GCTGAAGCCC CTGCAGAAAC TGGACCCGGC AATCATGACG
GGGGTGGTAA TGCTCATGCT CATCAGCCTC GCGGTGATCT ACAGTGGCAG CCAGGAAAGT
ATCCGCATCG TGCTTGCCCA ACTTTTGCGA TTCGCGATCG GCATCCTCGT CCTCATTCTC
ATTGCCAATA CACCACCGGA GCGTATTCGC GCCTGGGCAC CCGCCTTGTA CGCTACAGGC
GTCCTCTTAC TGGTGATCAC ACTCGTGGCG GGCAAAGCCA ATCTCGGCGC ACGCCGCTGG
CTGGGCGTCG GCCCGCTGAC CTTTCAGCCC TCGGAGCTCA TGAAACTTGC CCTACCCCTG
TTCCTCGCCT ATTACTATTC GCAACGGGAA AATGTTCGCC ACTGGCTTTC CGCCGTCACC
GGATTTGTGC TGATTGCCAT CCCCTTTCTG CTCATCGCCA AGGAGCCGGA TCTGGGTACG
GCGGCGCAAA TTGGCGCTGC CGGGGTCTTC ATGATGTGGC TGGCGGGTGT GCGCCGCCGA
TGGTTTATCG CGTTGATCAT CCTAGCCGCC ATCAGTGGGC CGGTACTCTG GCATTTTCTG
CATGGATACC AAAAAGAACG CATACTGACC TTTCTCGATC CTCAACGCGA CCCCCTGGGC
GCCGGTTATC ACATCATCCA GAGCATGATT GCCGTGGGTT CGGGAGGATT CTGGGGGAAG
GGCTGGTTCA ACGGTACCCA GGTCAACCTC GATTTCCTGC CGGAAGCCCA GACCGACTTC
GTTTTTGCGG GATTTGCCGA GGAGTTTGGT CTGGTCGGCG TCCTGATCCT CATCTCTACT
TATCTGCTCA TCGTCCTGCG CGGGCTGGTC ATTGCCTACG AAAGCCGTGA CGCCTTCGGC
CGTCTCATCG CCGGCACCCT GAGTCTGACG TTTTTTCTTT ATATTTTCAT AAATATGGGT
ATGACCACCG GAATTCTTCC GGTAGTCGGA GTGCCGCTGC CACTGGTAAG CTATGGTGGG
ACCGCCATGC TGACTTTCAT GGTCGGACTG GGCATACTGA TGTCGGTCCA CGCCCATCCA
CGCATCCACG AATGA
|
|---|
| Protein sequence | MSWHTRLLKP LQKLDPAIMT GVVMLMLISL AVIYSGSQES IRIVLAQLLR FAIGILVLIL
IANTPPERIR AWAPALYATG VLLLVITLVA GKANLGARRW LGVGPLTFQP SELMKLALPL
FLAYYYSQRE NVRHWLSAVT GFVLIAIPFL LIAKEPDLGT AAQIGAAGVF MMWLAGVRRR
WFIALIILAA ISGPVLWHFL HGYQKERILT FLDPQRDPLG AGYHIIQSMI AVGSGGFWGK
GWFNGTQVNL DFLPEAQTDF VFAGFAEEFG LVGVLILIST YLLIVLRGLV IAYESRDAFG
RLIAGTLSLT FFLYIFINMG MTTGILPVVG VPLPLVSYGG TAMLTFMVGL GILMSVHAHP
RIHE
|
|---|
| |