Gene Lferr_2172 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_2172 
Symbol 
ID6878163 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp2155433 
End bp2156494 
Gene Length1062 bp 
Protein Length353 aa 
Translation table11 
GC content63% 
IMG OID642790031 
Productgeranylgeranyl reductase 
Protein accessionYP_002220583 
Protein GI198284262 
COG category[C] Energy production and conversion 
COG ID[COG0644] Dehydrogenases (flavoproteins) 
TIGRFAM ID[TIGR02032] geranylgeranyl reductase family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.328813 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value7.12182e-10 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
GTGAACCCTT TAGCCATAGA TGTACTGGTG ATTGGCGCCG GTCCGGCCGG CGCGGCGGCA 
GCGCGTGCCG CTGCGGGCAA AGGCCTTACG GTGATCTGCG TGGATCGTCG TGCGGAGGTC
GGCGTCCCGG TGCAATGCGC CGAGTTTGTC CCCATGCCGC TCTTGCGTAC GGTGCATGAA
ACGGATTCGC GGGTGCAGGA CGTGGCAGGG ATGTTGACGG TGCTGCCCTC CGGGTTGCAG
CATCACAGCG TTTTCCCTGG CATCATGATT GACCGGGCAC GTTTCGACCA GGGACTGGCA
AAGCTGGCGC AGGCAGCCGG TGCTCAGCTT GAAACGCGTT GCCAATTCCT CGCCTGGGAT
GGCGAAGTGG CCCGCCTGCG GCGCGGCACC GGAGAGGCAT TCACCGTGCG CCCCCGCCTG
CTGATCGGCG CCGACGGGCC ACACAGTCTG GTGGCGGAGG CCGTGGGCTT GCCGCATCAA
GAGGTCGTTT ATACCCGTCA ATATACGGTG CCATTGCTGC GTCCCTATGC GGATACGGAT
ATTTTTCTTT CGGATGCTTT TCCGGGAGGC TATGGTTGGT TGTTTCCCCG TGGGCCGGTG
GCCAATCTCG GATTGGGTGC GGATCGGCAT TTTGAGAACA ACCTTAAATT GCCGCTGGAG
CAGTTGCATC GGCAGATGGT GGCGCGTGGC ATCATCGGCG AAGCCGTCCT CGGGCGTACC
GGTGGCGCGA TTCCCGTGGG TGGCATTCGA CCGATGGTGC GTGGCAACGT GGTGCTTGTC
GGAGACGCGG CGGGGCTTAC CCATCCCATC ACGGGGGCGG GTATCCCCGC TGCGGTGATC
AGTGGTGAAG GCGCAGGATT GGCCGCTGCT GGTTATCTGG CGGGCGACGG GGACGCGTTG
GAGAGCTACG CAGAAGATAT GCAGGATCAG TTTGGTCCGG CCTTGGCGCG GGCCGTGCAG
CGAAGAAAAT CTTTGGAAGC CGTGTGGCGA CAGCCTGCGG CCCAGGAAGA CAGGGTGATG
CGATCCGGCT GGATCGCCTT TGATGAATAC TACGCCGCCT GA
 
Protein sequence
MNPLAIDVLV IGAGPAGAAA ARAAAGKGLT VICVDRRAEV GVPVQCAEFV PMPLLRTVHE 
TDSRVQDVAG MLTVLPSGLQ HHSVFPGIMI DRARFDQGLA KLAQAAGAQL ETRCQFLAWD
GEVARLRRGT GEAFTVRPRL LIGADGPHSL VAEAVGLPHQ EVVYTRQYTV PLLRPYADTD
IFLSDAFPGG YGWLFPRGPV ANLGLGADRH FENNLKLPLE QLHRQMVARG IIGEAVLGRT
GGAIPVGGIR PMVRGNVVLV GDAAGLTHPI TGAGIPAAVI SGEGAGLAAA GYLAGDGDAL
ESYAEDMQDQ FGPALARAVQ RRKSLEAVWR QPAAQEDRVM RSGWIAFDEY YAA