Gene Lferr_2171 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_2171 
Symbol 
ID6878162 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp2154272 
End bp2155408 
Gene Length1137 bp 
Protein Length378 aa 
Translation table11 
GC content57% 
IMG OID642790030 
ProductRadical SAM domain protein 
Protein accessionYP_002220582 
Protein GI198284261 
COG category[R] General function prediction only 
COG ID[COG2516] Biotin synthase-related enzyme 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00159358 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value6.51126e-10 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAGTGCGG TAGCCCAAGA AAATTCTCAG CCCTTGAACT TTTATCGCCC GGATTATTTC 
GTCAAAACGC CGACGATGCG GTCACCTGAA TATGTGCAGC TCAGCACCGC GGCGGCGATT
ACGCTGGGTC TGGTGCCTGG GGTGATGCAC CGCACCTCCT GTACGAATTG TCTGAATCTA
CTGATGACCT ACCCGGAAGG CTGTCGTGCC AACTGCACCT ACTGCGGTCT GGCCCGGCAT
CGGGAAGAGA GCCGCGATTA CGCCGACCGC AACTTCATCC GGGTGGACTG GCCGACGGTG
CGCGTGGATG AAATGCTCGA ACGTATCGCC AAGAACAGCG ACAAGGGTCA GTTCCAGCGT
ATGTGCATCA GTATGATCAC CCACCCCGAT TCAGACCATG ATACACAAGT CATGCTGAAG
CGCTGGATGG AGGTGGCGCC CCATATCCCC GCTTCCATTC TCTCCAACCC GACCACCATG
GATAAACAGG ATCTCATCGA CCTCAAGGCG ATGGGCGCGG ATATCTTTAC CGTCGCCCTG
GATGCGGTGA CGCCGGAAAT CTTCGAGCGT ACCCGTGGCA AGACGGTGCA GAGCCCCCAT
TCCTGGGACA AGTACTGGCA GACCATCGAA TGGGCGGCAG AGATTTATGG TCCCGAAAAA
TTCGGTGCGC ATCTGATCTG CGGCATGGGC GAGACCGAGC AGGAAATCCT CGCCGTTTGT
CAGAAGATGA AAGACATGGG TGGCCATAAC CACATGTTTG CCTTCTTCCC CGAGAAAGGC
TCCATGATGG AGGATTGGGA CGCCGTGCCC CAGGACCATT GGCGCCGGGT GCAGTTGGGC
CGCTTCCTCA TCGATTATGC GGGTGGCCGT TATGAGGATA TGGAGTTTGA TCAGTATGGT
CGCGTGCTGA GTTTCGGTTA TCCCCAGGCG GAGCTGGAAG ACATCATCGA CTCGGGTAAG
CCCTTCCAGA CCTCCGGCTG CCCAGGGAAG GATGATGAAG AAGTCAGCGC CTGTAATCGG
CCTTATGGGG ATTCCTCGCC TTCGGACATC CGCTCTTTCC CCTTTGCGTT GAACAGGGAA
GATGTGGAAA TCGTGCGTCG CCAGATGCGG TTGCAGGACT TGCGGTTTCC CGGATAA
 
Protein sequence
MSAVAQENSQ PLNFYRPDYF VKTPTMRSPE YVQLSTAAAI TLGLVPGVMH RTSCTNCLNL 
LMTYPEGCRA NCTYCGLARH REESRDYADR NFIRVDWPTV RVDEMLERIA KNSDKGQFQR
MCISMITHPD SDHDTQVMLK RWMEVAPHIP ASILSNPTTM DKQDLIDLKA MGADIFTVAL
DAVTPEIFER TRGKTVQSPH SWDKYWQTIE WAAEIYGPEK FGAHLICGMG ETEQEILAVC
QKMKDMGGHN HMFAFFPEKG SMMEDWDAVP QDHWRRVQLG RFLIDYAGGR YEDMEFDQYG
RVLSFGYPQA ELEDIIDSGK PFQTSGCPGK DDEEVSACNR PYGDSSPSDI RSFPFALNRE
DVEIVRRQMR LQDLRFPG