Gene Lferr_2170 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_2170 
Symbol 
ID6878161 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp2152716 
End bp2154059 
Gene Length1344 bp 
Protein Length447 aa 
Translation table11 
GC content57% 
IMG OID642790029 
Productaromatic hydrocarbon degradation membrane protein 
Protein accessionYP_002220581 
Protein GI198284260 
COG category[I] Lipid transport and metabolism 
COG ID[COG2067] Long-chain fatty acid transport protein 
TIGRFAM ID[TIGR03304] outer membrane insertion C-terminal signal 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value4.80388e-07 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value6.85095e-10 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAAAAAAT CACGGATCTT AGGGATTGCG GTCGGCGCGA CGTTGGCGAT GGGCCTGTCG 
GCCAGTGCGT TTGCTACAGA TGGTTATCAG TTGATCGGTA TCGGGCAGTA TGCCGTGGGT
ATGGCGGGCG CCGTTGTTGC GGCTCCGGAT GATCCCTTGT CTGCGGCTAT GAGCAACCCG
GCCGGATTGG CATTGATGAC GCCGCAGGCG GCATTCTCGG CGGAGATTTT CAACCCGGTC
CGCAAGACGA ATCTGGGTTT TGGCGAGATC GGCAGCCATA GCAATGTCTA CGGTGTTCCG
GCCATCGGCT GGGTGGCCCC GGCCTTTGCC AAGAACTGGG TATTCGGTGG CGGCGTTTAC
GGCACTTCTG GTCTGGGTGT CAATTATCTG CAGAATTTGG GTCCCGCCGG TTACGCGCAG
GCCTATAGCA GTATCACCTT CATGCAGATG GCGCCGTCCG TTGCGTGGAA GGCAAATGAT
CGTCTCTCCG TCGGCGCATC GTTGAATATT GCGGCGGAGC AGGGTTCTTT TCAGCAAACA
TTTTCCCAGA ACGCCCCTGT TGTCGTAGGT GTTGGTCCGA ATGGCCCCAT AACGCAAATG
ATGCCGCAGC AGGGTGGACT CAATCTGGCC ACCCCGAGTT GGGCCTATGG CGTCGGCGCG
ACCTTGGGCG TGTTGTATAA GGTGAATCAC ATGGTGACAT TGGGTGCGAC CTATAAATCA
CCCATCCTGT TCACCCCCAT GACCTGGCAA GCAGGTTTGC AGAACCAGGT GAGCCCGGCG
ACGGGTAATG GCGTGATCGG AGCACCTGGC CAGTATAGTG GGCACCTCAA CTATCCTCAG
CAGATCGCCC TGGGTCTCGC GATTCGTCCC ATCCGGCAGT GGTTGGTCAG CATCGAGGGA
CAATGGATCA ACTGGCACAA TACCATGAAC AATTTCACCA TTTTTGGACC ATGGACGGCA
TATCAGGGTG GCGCAGCAGT GGGAGGATTG TCCTCCATTG CACTCCCCAT GCACTGGAGC
AACCAGTGGG TGGCCAACTT CGGTACCCAG TATGACGTGA ACAACTGGTT GCAGGTACGT
GCCGGTTATA CCTGGGGTTC CAATCCCATC AGCAACAACA CCATCGCCTC CAATCTGATC
TTCCCGGCCA TCGTGCAGAA TGCCATCACC TTTGGCGCCA CGCAAAAGCT GGGCATGGGC
TGGAAGCTGA CGGAAGCCTA CATGCACGAG TTCTCCAATA CCAATACGGG TCCGGCCGGT
TCTTCCCCCT TCGGTGGTCC TATGCCTGCC AGTGCCACCA TGTACGAAAA CTCCTACGGT
ATTCAGGTCG GTTACGACTT CTGA
 
Protein sequence
MKKSRILGIA VGATLAMGLS ASAFATDGYQ LIGIGQYAVG MAGAVVAAPD DPLSAAMSNP 
AGLALMTPQA AFSAEIFNPV RKTNLGFGEI GSHSNVYGVP AIGWVAPAFA KNWVFGGGVY
GTSGLGVNYL QNLGPAGYAQ AYSSITFMQM APSVAWKAND RLSVGASLNI AAEQGSFQQT
FSQNAPVVVG VGPNGPITQM MPQQGGLNLA TPSWAYGVGA TLGVLYKVNH MVTLGATYKS
PILFTPMTWQ AGLQNQVSPA TGNGVIGAPG QYSGHLNYPQ QIALGLAIRP IRQWLVSIEG
QWINWHNTMN NFTIFGPWTA YQGGAAVGGL SSIALPMHWS NQWVANFGTQ YDVNNWLQVR
AGYTWGSNPI SNNTIASNLI FPAIVQNAIT FGATQKLGMG WKLTEAYMHE FSNTNTGPAG
SSPFGGPMPA SATMYENSYG IQVGYDF