Gene Lferr_2150 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_2150 
Symbol 
ID6878141 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp2134790 
End bp2136046 
Gene Length1257 bp 
Protein Length418 aa 
Translation table11 
GC content57% 
IMG OID642790009 
ProductCarbohydrate-selective porin OprB 
Protein accessionYP_002220561 
Protein GI198284240 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3659] Carbohydrate-selective porin 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value3.22479e-07 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00030161 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCCCCGTC TTTTTCATCC GGCCACTGCC GTGCTCATCA TCTGCGCTGG CACTTTCGGG 
CCATTTTCCG GTATCTGGGC GGCGGAGAAT CCAGCGACCC GGGGAAACGG CCCTATCCCC
GATACAACCG GCCTTTCTCC CAAATATTTG CCCGCTTACC GTCATCTGAT AGACGGTATC
TCCTGGGCTG GGCATGCCGA CAGTGAGCTA TTTTCCAACC TCAGCGGCGG CATTCGCCGG
GGCAGCGAGG GCAACCTTGC CGGCCAGATT GGTGGCGAGT ACGACACCGA GAAGGCCGGT
CTCTGGAAGG GCGGCAAATT TAGCCTCTCC CTCATGGGCA TTTATAGCAG CAAAGTCCAG
CAAAATTATA GCGGCGACAT CCAGACGGCC AGCAACATCT GGGCACCTGA CGCGATTCGT
TTTTACGATG CCGCCTTTCG CCAACGCTGG ACGGACTGGC TCAACACCCG TGTCGGTTAC
ATGGATGTGA ATTATTACTT CGACGTCACT GCCAATGCCT TGCAGCTCAT CAACAGCTCC
TTTGGCATAA CGCCGACCAT GACCGTCAAT GTCCCGGGTA CCGCCACCTA TCCTTATTCG
GGCCTAGGGT TCCTGGTGGG CATCCATAAC GAGCACCTGA GCAGCAAGGT TGCAGTATTT
CAGGGCGACC CACAGCACCA GACCTCCGCC TTCGATCGCG GCTACATGGC GTTGTGGGAA
GGTGGCCTGC ACTGGGGCAA AAAAGATGAC GAGGATCTGG AGGACAATAC CGACAATTAC
GGCAGGTATA TACTCAAAAT AGGTGGTTGG CATTATCAAC AATCCAACCC TGACCTCTAC
GGGCTTTCCC CGACCACCTC CGGCATCTAT GCCGTGGCCG AGGGCAATTG GGATCTATCT
GGAGAACGGG AACTGGGCGC TTTTATCCAG ATGGGCGGTG CGCCGCAGAA CTTCAATCCA
GTACCTTGGT ATCTGGGCAT CGGTTTGCGC CTGGGCCATC CCTTCGCCAG TCGGCCGGAT
GACAGCCTGT CCGTGGGCAT GGCTAAGGCA TGGCTACGCT CCGGACCCGT GGCGGATGCC
CTGGGTGTGA AGCCCGCGGA TATCCGCGGC GCGGAAACGT CCTATGAATT GACCTACGTG
GCGAAACTTA CGGAGCATGT CAGTCTGCAG CCGGACCTTC AGTATATTCA GCACCCCAAT
GGCTATTATC CGGATAGCAC CGTTGGCCTT CTGCGCGTAC ATGTTGAATT CTTCTGA
 
Protein sequence
MPRLFHPATA VLIICAGTFG PFSGIWAAEN PATRGNGPIP DTTGLSPKYL PAYRHLIDGI 
SWAGHADSEL FSNLSGGIRR GSEGNLAGQI GGEYDTEKAG LWKGGKFSLS LMGIYSSKVQ
QNYSGDIQTA SNIWAPDAIR FYDAAFRQRW TDWLNTRVGY MDVNYYFDVT ANALQLINSS
FGITPTMTVN VPGTATYPYS GLGFLVGIHN EHLSSKVAVF QGDPQHQTSA FDRGYMALWE
GGLHWGKKDD EDLEDNTDNY GRYILKIGGW HYQQSNPDLY GLSPTTSGIY AVAEGNWDLS
GERELGAFIQ MGGAPQNFNP VPWYLGIGLR LGHPFASRPD DSLSVGMAKA WLRSGPVADA
LGVKPADIRG AETSYELTYV AKLTEHVSLQ PDLQYIQHPN GYYPDSTVGL LRVHVEFF