Gene Lferr_2147 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_2147 
Symbol 
ID6878138 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp2130622 
End bp2132547 
Gene Length1926 bp 
Protein Length641 aa 
Translation table11 
GC content64% 
IMG OID642790006 
Producthelicase c2 
Protein accessionYP_002220558 
Protein GI198284237 
COG category[L] Replication, recombination and repair
[K] Transcription 
COG ID[COG1199] Rad3-related DNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0303331 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00135971 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGTCGGGCG TGACTGGGGG AGGCCAGGAC TGGTCTGTGC TGTTGGGCGA GACCGGCGCG 
TTGGCACGGG CGTTGCCGCA ATTCAGGGCA CGGGAGCAGC AACAGGCTAT GGCCGCGCAG
GTGGCCCATA CCCTGCGCGA CGGAGGGGTG GCGCTGATCG AGGCAGGGAC GGGCACCGGT
AAAACCTTCG CTTATCTCCT GCCCGCCATG CTTTCGGGGC GCAAGGTGCT GGTTTCTACC
GGCAGCAAGG CGCTGCAGGA TCAGATACTG GAGAAGGATA TCCCGCTGCT GTTGCGGGCG
ATGGGAAAGC CCTTGCGCGT GAGTCGCCTT AAGGGGCGAG CCAACTATCT CTGCCGGCAT
CGTCTGCAAC GCTTCAGTGC CGAGGGTGTG GCGCCAGCCT TGGTGGCACC CTTGGCGAGG
GTGGCCGACT GGGCGGGGCG GACGCGGGAG GGCGACGTCA GTGAACTGAC CTCGGTGCCC
GAAGATTCGC CGATCTGGCC TCTGGTAACG TCGACCCGGG ACAACTGTCC TGGCAGTGAA
TGCCCAGAAT ATGGGCGCTG CCATGTCATC GAGGCGCGGC GCCAGGCTCA GGAGGCGGAG
ATTCTGGTGG TGAATCATCA TCTGCTTTTT TCTGACTTGG CGTTGAAGGC CAACGGTATG
GGGGACCTGT TGCCGCGAGT CGATGCCATG GTGCTGGATG AGGCCCATCA AGTGCTGGAT
CTGGCCGGGC GTTATTTCGG CCAGCACCTG AGCAGCCATC AGCTCTGGGA CTGGGGGCGG
GATAGCCGCG CCGAAACTCT GGCCGAAGCG GGGGATGACG AGGGTTTGCT TGCAGCAGCC
GCACAGGTGG AAACGCAAAC GACGGCGTGG CGGACGGTTC TGGGTCCGGG TGACGAGCGT
GGCTCCTGGG CTTTGAATCC CGATAGTGCG GAAGGCTCTG CCTTCGCCCG TTTGCGTCAG
GCGGTGGCGG AACTGGGTCA GGCACTGAAC GCTGCAGCAG CGCGCGGCAA GGGCCTGGAA
CAATGTGCGG CGCGTGGGGT GGTGCTGCTG GCGACGGTGG ATTTCTTTGC CGCGCACAAC
GCCCCGAACA TGGTGTTCTG GCAGGAGAAG AAATCTCGCA CGGTGCAGCT CCATGCCACC
CCCCTGGATG TGGCGGCGCC CTTGCAGCGG CACCTGCTGG AACCGGTGGA AAGTGTCATT
CTCACCAGTG CGACCTTGCG GGTAGGTGAC AGTTTCGCCA GTACTGAACG TGCTCTGGGC
CTGACGGCGG TGAGCACCCT TACAGCAGCC TCGCCCTTTG ATTATGCGCG GCAATCCCTG
CTCTATCTAC CGCCTCTGAT GCCGGAGCCC GGTCATCCTT CCTATACACG GGCTTGCTTG
GACGCCGCGG CACCAGTCAT CGAGGCCAGT GGCGGACGGA CCTTCTTTCT CTTCACCAGT
CACCGGGCTT TGCAGGAGGC GGCGGTATCC CTGCCACAGC GGTTGTCCTT CCCCATTCTG
GTGCAGGGGA GTATGCCGCG CCCCCGTCTC CTGGACCGTT TTCGCAGTTT GGGTAATGCG
GTTCTGCTGG GTGCGGCCAG CTTTTGGGAG GGGGTGGACG TGCAGGGCGA GGCCCTCTCC
TGTGTCATCA TCGACAAATT GCCCTTTGCC AATCCCTCTG ATCCGATTCT GCGTGCCCGC
ACGGAGCAGT GTCAGGCAGA GGGCGGTGAA CCCTTCCGCG AGTTACAGAT TCCTCAGGCG
GTGATTGCCC TGCGCCAGGG TGTAGGGCGG CTGATTCGCT CGGAGATGGA TCGCGGTGTG
CTGATGCTTT GCGACCCGCG CCTGCGCAGC AAGGGTTACG GGCGCATCTT CCTCGACAGT
CTGCCGCCTA TGCGGCGTGT TTCCAGCCTC GACGCGATCC ATGCGTTCTG GCGGGGAGAA
GCCTGA
 
Protein sequence
MSGVTGGGQD WSVLLGETGA LARALPQFRA REQQQAMAAQ VAHTLRDGGV ALIEAGTGTG 
KTFAYLLPAM LSGRKVLVST GSKALQDQIL EKDIPLLLRA MGKPLRVSRL KGRANYLCRH
RLQRFSAEGV APALVAPLAR VADWAGRTRE GDVSELTSVP EDSPIWPLVT STRDNCPGSE
CPEYGRCHVI EARRQAQEAE ILVVNHHLLF SDLALKANGM GDLLPRVDAM VLDEAHQVLD
LAGRYFGQHL SSHQLWDWGR DSRAETLAEA GDDEGLLAAA AQVETQTTAW RTVLGPGDER
GSWALNPDSA EGSAFARLRQ AVAELGQALN AAAARGKGLE QCAARGVVLL ATVDFFAAHN
APNMVFWQEK KSRTVQLHAT PLDVAAPLQR HLLEPVESVI LTSATLRVGD SFASTERALG
LTAVSTLTAA SPFDYARQSL LYLPPLMPEP GHPSYTRACL DAAAPVIEAS GGRTFFLFTS
HRALQEAAVS LPQRLSFPIL VQGSMPRPRL LDRFRSLGNA VLLGAASFWE GVDVQGEALS
CVIIDKLPFA NPSDPILRAR TEQCQAEGGE PFRELQIPQA VIALRQGVGR LIRSEMDRGV
LMLCDPRLRS KGYGRIFLDS LPPMRRVSSL DAIHAFWRGE A