Gene Lferr_2016 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_2016 
Symbol 
ID6878007 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp2018831 
End bp2019577 
Gene Length747 bp 
Protein Length248 aa 
Translation table11 
GC content60% 
IMG OID642789888 
ProductUBA/THIF-type NAD/FAD binding protein 
Protein accessionYP_002220440 
Protein GI198284119 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG1179] Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCCATC CTTTTGCTCG TACCGAAATT CTCCTGGGCG CTTCCGCTGT CGCGAATCTG 
CGTGACCGCC ACGTGCTCCT TGCCGGCGTC GGTGGCGTTG GCGGTTATGT CGCGGAAAAC
CTTGCCCGTG CCGGGATAGG GCATATCACG CTCATTGACC ACGACGTGGT CGGCATTTCC
AATATCAACC GGCAAATCGT CGCCCTGCAT TCCACGCTGG ATCAGCCCAA GGTGGCGGTC
ATGGCGGCGC GGATTCGGGA TATTTTCCCC GACTGTGTGC TTGAAACCCG TCAGGAGTTC
ATCAGCGCGG ACAATGCCAC ACGCCTGCTG GCGGACAGTG GTGCGGAAAT GGTCGTGGAT
TGCATTGATG CCATCGCCTG CAAAGCGATT CTTATCCAGA CGGCGCAGAC TCTGGGTTTA
CCGGTTTTTT CCAGCATGGG GGCGGGCAAT CGTCTCGATC CCCGCCGGGT TCGTGTCGCA
AGACTCAACC AGACGGAAAA ATGCCCCCTG GCCCGAGAAT TGCGCGCGCT GCTGCGCAAG
AATGGCGCGT CCCTCGACGT GCAGACCGTC TTTTCCGATG AATCCCCGCG CCGGGAAGCC
CCTCCCGTGG AAGTATCCAG TGCGGGCGGG CGGGCAAAAA CGGTCAACGG CACCATTTCC
TTCATGCCCG CGCTCTTCGG GGTAGTATTG TCCGGCATCG TTCTCCAGCA TTTGCTGGCA
ACTGGCGAAA ACCCCAATGG CGTCTAA
 
Protein sequence
MPHPFARTEI LLGASAVANL RDRHVLLAGV GGVGGYVAEN LARAGIGHIT LIDHDVVGIS 
NINRQIVALH STLDQPKVAV MAARIRDIFP DCVLETRQEF ISADNATRLL ADSGAEMVVD
CIDAIACKAI LIQTAQTLGL PVFSSMGAGN RLDPRRVRVA RLNQTEKCPL ARELRALLRK
NGASLDVQTV FSDESPRREA PPVEVSSAGG RAKTVNGTIS FMPALFGVVL SGIVLQHLLA
TGENPNGV