| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_2000 |
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| Symbol | |
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| ID | 6877990 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011206 |
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| Strand | - |
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| Start bp | 1999529 |
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| End bp | 2000611 |
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| Gene Length | 1083 bp |
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| Protein Length | 360 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642789871 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_002220424 |
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| Protein GI | 198284103 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.461729 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACACCT GGAAGCAAAC CGCGCGGATC GCGGCCCTGA TATTCGCTGT GGCAAGCCTC
GCCGCCTGCA GTAAATCGCC TCCCGAGGCG CCCCTGGCGC AGGGTAAAGT CTCTGCGCCC
GTCCTGCAGA TACGGAATCA AGGTATGGCT GCCTACGCCC GTGTGCCGGG TACGGTCGTT
GCCCATCAGC AGGTGCAGCT CAGTTCGCGT CTGAGTGGTT ACATCCACTC CATGAGTGTG
CGTGATGGAC AGTCGGTACG GGCGGGACAA CTGCTTTTTG AGGTAGATCC GACGGATGTC
GTGGGGCAGG TGCAGCAGGC GCAGGCGGGA CTGGCTGAGG CTCAGGCGGC GCTCACCGAC
GCCCGCTCCA ATTATGAGCG GTTCAAGGTC CTGTACGCTC AGAAGGCTAT TCCCAAGCAA
CAGTGGGACC AGGTAAAGTC GGCCTATGGT ATGGCGCAGG CCCGTGTTGC AGCCGCCCGC
GGTGGGGTCG GCACGGCACA GTCACAACTG CGCTATGCCC GGGTAACGGC GCCCTTCTCC
GGGATCATCA CACGCAAGTT CCTGCAGAAC GGAGACCTCG CGTCACCCGG TCAGCCCATT
CTGGCCCTAG CGGACACTTC CCGACTGGAA GTCCAGTGCA GTGTCAGCGG GACGCTGTAT
CACAGCCTCC AGATCGGTCA GAAAATCGCG GTCCTCGTCG ATGGAAAACG TGTTCCCGCA
ACGGTTCTGG ATTTGGTCGG GGCTGCGGAC GCGATGACCC ATGCCCATAC GGTCAAACTC
AGCCTGCCCG CCGACAGTAC GCTACAGGCT GGTGACTATG TCAGCGTGGA AGTGCCGGTC
ACCCAGCGGC AGGTGATGAC GGTGCCAGCG GCTGCCTTGC TGGATCGGGC TGGAATCCCC
GGTGTTTTTG TCGTTGACGC GCAAGGTGTC GCGCATTATC GCATGGTGCG ACCGGGTCCG
AGCACGCCGG AGGGTGTGGA AATTCTTTCG GGGCTGAGTG CGGGAGAGAC GGTGGTCGTG
GGCAATCTTG CCGCCGTGAA TAACGGAGAT CACATCGAGC CAGAGGGAGC TACCCATGGC
TGA
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| Protein sequence | MNTWKQTARI AALIFAVASL AACSKSPPEA PLAQGKVSAP VLQIRNQGMA AYARVPGTVV
AHQQVQLSSR LSGYIHSMSV RDGQSVRAGQ LLFEVDPTDV VGQVQQAQAG LAEAQAALTD
ARSNYERFKV LYAQKAIPKQ QWDQVKSAYG MAQARVAAAR GGVGTAQSQL RYARVTAPFS
GIITRKFLQN GDLASPGQPI LALADTSRLE VQCSVSGTLY HSLQIGQKIA VLVDGKRVPA
TVLDLVGAAD AMTHAHTVKL SLPADSTLQA GDYVSVEVPV TQRQVMTVPA AALLDRAGIP
GVFVVDAQGV AHYRMVRPGP STPEGVEILS GLSAGETVVV GNLAAVNNGD HIEPEGATHG
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