Gene Lferr_1875 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_1875 
Symbol 
ID6877860 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp1856385 
End bp1857773 
Gene Length1389 bp 
Protein Length462 aa 
Translation table11 
GC content61% 
IMG OID642789745 
Productcysteinyl-tRNA synthetase 
Protein accessionYP_002220303 
Protein GI198283982 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0215] Cysteinyl-tRNA synthetase 
TIGRFAM ID[TIGR00435] cysteinyl-tRNA synthetase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000229747 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCAATC TGCCCGTAGT GACCCTCTTT GACACCCTGC GCCGCAGTAA AACGCCGCTA 
GAGGTGCTGC GCCCCAATCA TGTGGGACTC TATGTCTGCG GGATGACCGT ATACGACTTC
TGTCATCTCG GCCATGCCCG GGTCATGGTC ACCTTCGATA CGGTGGTGCG CTATCTGCGT
GAGCGCGGAT ATGAGGTGAC CTACGTTCGC AATATCACCG ATATCGACGA CAAGATCATT
CGTCGGGCGT TGGAGTGTGG CGAGTCGATT CAGTCACTCA CGGCACGTTT CATCGATGCC
ATGCATGAAG ATGAGGCGGC GTTGCTCTGC CGGAGACCTG ATCTGGAACC GCGGGCGACG
GAGCATGTGG GCGCCATGCA AACCCTGATC GGCGAACTCA TCCACAGAGG GCATGCCTAT
GTGGCGGCCA ATGGCGATGT GTACTACGCG GTGCGCAGTT TTCCGGAGTA TGGCCGCCTT
TCCGGCAAGT CCATCGACGA GTTGACGTCG GGTGCGCGGG TCGAAGTCGG CGAAGAAAAA
CGCGATCCTC TGGATTTTGC CCTGTGGAAA GCGGCCAAGC CCGGCGAGCC GTCCTGGCCT
TCAGCGTGGG GAGAGGGGCG GCCGGGCTGG CATATCGAGT GCTCCGCCAT GTCCGCCGAC
GCCCTGGGCT GTGCCTTTGA CATACATGGC GGTGGTGCCG ATCTGCAGTT CCCGCATCAT
GAGAATGAAA TCGCCCAGTC CCAGGGCGCG GGCTGTGCTT TTGCCCATTA CTGGATGCAC
AACGGCTTTG TTCGCATCAA CGACGAGAAA ATGTCAAAAT CCCTGAATAA TTTCTTCACG
GTGCGGGAGC TTCTGCCCCG CTATTCCGGC GAAGTGCTGC GTTTTTTCAT TCTCTCCAGC
CATTACCGCA GCCCATTGAA TTATGCGGAA GACGCGCTGG AGCAGGCGAG AGCGGGCCTC
ACGCGGCTCT ATACCGCCCT GCGTGGAATG CCCAGACCTA AAATCGTGGC GGAGATGGGG
AGCGAGTGGC GGGAGCGTTT CCATGCCGCC ATGAGTGATG ATTTTCATAC GCCGGCAGCC
CTTGCCGTGC TTTTTGATCT GGCCCGCGAA CTGAATCGCC TGCGGGACGA AGGCAGTGAG
GTGGCAGCGC CGCTCGCCAC CCTGTTACGG GAACTGGCGG GTGTGCTGGG CTTGCTGCAA
CAGGACGCCG AGGGTTTTCT TCGCGGCCAC GACGCGGACG TATCCTGGAT CGATGGCCGT
ATTGCCGCGC GCGCCGCGGC GCGACAGGCC CGTGATTTTG CCGGAGCCGA CGCCATCCGG
CAGGAATTGA CAGCCGCTGG AGTCATCCTC GAAGATGGCC CCGGCGGTAC CACATGGCGG
CGGGGCTAA
 
Protein sequence
MINLPVVTLF DTLRRSKTPL EVLRPNHVGL YVCGMTVYDF CHLGHARVMV TFDTVVRYLR 
ERGYEVTYVR NITDIDDKII RRALECGESI QSLTARFIDA MHEDEAALLC RRPDLEPRAT
EHVGAMQTLI GELIHRGHAY VAANGDVYYA VRSFPEYGRL SGKSIDELTS GARVEVGEEK
RDPLDFALWK AAKPGEPSWP SAWGEGRPGW HIECSAMSAD ALGCAFDIHG GGADLQFPHH
ENEIAQSQGA GCAFAHYWMH NGFVRINDEK MSKSLNNFFT VRELLPRYSG EVLRFFILSS
HYRSPLNYAE DALEQARAGL TRLYTALRGM PRPKIVAEMG SEWRERFHAA MSDDFHTPAA
LAVLFDLARE LNRLRDEGSE VAAPLATLLR ELAGVLGLLQ QDAEGFLRGH DADVSWIDGR
IAARAAARQA RDFAGADAIR QELTAAGVIL EDGPGGTTWR RG