Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_1873 |
Symbol | |
ID | 6877858 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | - |
Start bp | 1852844 |
End bp | 1853797 |
Gene Length | 954 bp |
Protein Length | 317 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642789743 |
Product | pseudouridine synthase, RluA family |
Protein accession | YP_002220301 |
Protein GI | 198283980 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0755786 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.858498 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGGAAA ACGGGGTGCG ACAATGGCAG GTGACCGACG CGGAAGCCGG GCAGAGGCTG GATAACTTCC TCTTGCGGGT GATGAAAGGT GTGCCGCGCT CCCATATCTA CAAAATCCTG CGCAGCGGCG AAGTTCGGGT GAACAAGGGG CGGGCGCGAC CGCACTACCA CCTGGCAGAG GGCGACGTGC TGCGACTGCC GCCGGTGCGG GTGGCGGCGC CCAGCGATCC CGCCGTACTG CCAGCCTACC TGCAGGGCCA GTTGGAAGCC GCTGTCCTTT ACGAAGACTC CCATCTGCTG GTGCTGGACA AGCCCAGCGG GCTGGCCGTG CATGGGGGAT CGGGCTTGAG CTGGGGCGTC ATCGAAGCAT TGCGCCAGTT GCGGCCCGAT GCCCGTGAAC TGGAGCTGGT ACATCGCCTG GACCGCGACA CCTCCGGCTG TCTGATATTC AGCAAGAAAC GCTCGGCGCT GCGTGCGCTC CATGAAGCCC TGCGGGCAGG CCTCATGGAG AAACGTTATC TGGTGCTGGC GGCCGGTGAC TGGCAGGGCG AAGCGCGTTC CGTGCGTCTG GCCCTGCGCA AGAACACCCT GCAGTCCGGC GAGCGCATGG TGCGGGTGGA CCCAGTGGAG GGTAAGGCCG CACATACACA TTTCCTGCCA CTGGAACGTT TCCGCGGCGC GGTGCTGTTG CAGGCGGACC TCGATACCGG GCGTACGCAC CAGATTCGGG TTCACCTGCA AGCGATTGGG CATGCGGTGG CAGGCGATGA GAAATACGGC GATGCGGCCT TCAACCAGCG TCTGCGCGCC CTGGGCCTGC GGCGACTTTT TTTGCACGCG GCCCTGGTGG CCTTCCGCCA CCCGCAGGAC GGCCGGCCCA TGCGCATCGA GGCCCCGCTG CCTGCTGATC TGCAAGCCAT TCTCACCCCA CTGCGTAAGG AGTCTGCCGG ATGA
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Protein sequence | MAENGVRQWQ VTDAEAGQRL DNFLLRVMKG VPRSHIYKIL RSGEVRVNKG RARPHYHLAE GDVLRLPPVR VAAPSDPAVL PAYLQGQLEA AVLYEDSHLL VLDKPSGLAV HGGSGLSWGV IEALRQLRPD ARELELVHRL DRDTSGCLIF SKKRSALRAL HEALRAGLME KRYLVLAAGD WQGEARSVRL ALRKNTLQSG ERMVRVDPVE GKAAHTHFLP LERFRGAVLL QADLDTGRTH QIRVHLQAIG HAVAGDEKYG DAAFNQRLRA LGLRRLFLHA ALVAFRHPQD GRPMRIEAPL PADLQAILTP LRKESAG
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