Gene Lferr_1737 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_1737 
Symbol 
ID6877719 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp1710151 
End bp1711968 
Gene Length1818 bp 
Protein Length605 aa 
Translation table11 
GC content52% 
IMG OID642789606 
Productsignal peptide peptidase SppA, 67K type 
Protein accessionYP_002220166 
Protein GI198283845 
COG category[U] Intracellular trafficking, secretion, and vesicular transport
[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0616] Periplasmic serine proteases (ClpP class) 
TIGRFAM ID[TIGR00706] signal peptide peptidase SppA, 36K type
[TIGR00705] signal peptide peptidase SppA, 67K type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000998332 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value8.52075e-06 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGCGCATAT TGCTTCTCCC CTTCATTTGG CTGGGCCGCG CTTTGCACTG GCTACGCATA 
GGAATTCTCA ACCTGCTGAC GCTCGCCATT CTGTTGTTCC TTATCGCCTT TCTTGCCTAT
AAACTGTTCT ACCAGGTTGC CGTCCCCGAT GATGCTGCAT TGCTTGTCGC TCCCCAGGGC
TCCTTGTTTT ACAGCCGAAA CGAATCCTGG CAGACTCGTG CGCTCGATCA TCTTGACGGG
CGAAAACCTG CAGGTGTTTC CATTAGACAG ATGGTTCAAG CCATTGATCG TGCCTCCACG
GACGCGCGTA TCCACCTGCT GGAATTGAAT TTAAGTGACT TTGGTGGGGG GAGTATCACC
CAGCTAGACA CCGTAGCACG GGCTCTTCAG CGTTTTCGCG CTCATGGTAA ACCCATTTAT
GCCTATGCGC CCGACTATTC CCAGGATGCT TATTTACTGG CCGCCCAGGC CAACCATATT
TACATGCCCA GGCTGGGTAC GGTCCTGATC ACAGGATTTT CGACGCGTGG TTTATACTTC
AAAGGATTGC TGGACAAGTT GGGAATCACG GTGTATTCCT TTCGGCAAGG TAAATATAAA
TCCGCCATGG AGCCTCTTAC CCTGACGCAT ATGTCCAAGT CTGCGCAGGT AGAAAATGCC
GCCTGGCTGA AGGTGTGGTG GGATACTTAT CTGCAAGATG TCGCCAAGGG TCGTGGGCTG
AAGGCCACAC TGGTCAGCCG TTATGCAGAT CAGTTGCCTG AACTCTTAGA AAATTATCAA
GGAAATGCTG CGGAACTTGC CCTGAAGCAA GGGCTGATCA CTCGTATCGG CGATGAGCAC
GCTTTCAGAC AGGCGGTTGC CGCCGCACTC AAACAACCTC CTAAACACAT CAAAAAGATT
GGGTTGCATG CCTATCTGGC GGCAACCAAA CCATCCACAA CCGCCAGCGC CAAAATCGCG
GTCGTACCCA TTGACGGAAT GCTCGTAACC GGAGATGCCC CCCTCCCAGG AGTAGTCGCT
GCCCAAGCCA CGATCAAACA GTTGGATCGC GTAGGTCATG AAGCCTCCGT CAAGGCAGTG
GTTTTGCAGG TCAATAGTCC GGGTGGCGAT GTAAACGCTG CCCAAGCGAT TCGTGCAGCT
ATTTTACGCA TACGCAAGGC GCACAAACCG GTTATCGTCA GCATGGGCAC CTTAGGTGCC
TCGGGTGCTT ACTGGCTCTC AACTGCAGCA GATCGTATCT ATGCACACCC CACCACGCTG
ACTGCCGATA TTGGTGTGTT CGCACTATTT CCGAATTATG CGGGGCTGCT AAAAAAACTG
GGCATTCACT ATTCCGGGAT AGCCACTACG AGGAATGCCA ACGCCATGTC CCCATTTTCA
CCCCTGGGTA AAAACGTTCA AAAAGCACTT CAGGCCATGG TAGACAATAC ATACGCTGAC
TTCGTAAACC TGGTGGCCAA TGCCAGACAT ATCCCAACAA ATAAAGTTGA ACACGATGCC
CAGGGTCGCG CCTGGAGTGG CCTGGACGCC TATCACCTTG GGTTGGTCAA TGCACTCGGG
GGCATGCCGC AAGCCATTCA GGAGGCCGCC AAACTGGCAA AACTTTCTAA GGGCAAATAT
CAGGTACAAT ACCTGCCTCC ACCAACTCCA TCGAATAACA TCCCACAATG GTTGAACATG
TGGAGTCTGG CAAGACTGCG TGACGTTATA TTGGGGGAAA ATTCCGCGCT CCATGGAGTG
ATTCCCATGG AACAGATTCG TTTACTGATT CATGAAGCAC ACCCATACGC CCTTATGGCT
TATTTACCCG TAAAATGA
 
Protein sequence
MRILLLPFIW LGRALHWLRI GILNLLTLAI LLFLIAFLAY KLFYQVAVPD DAALLVAPQG 
SLFYSRNESW QTRALDHLDG RKPAGVSIRQ MVQAIDRAST DARIHLLELN LSDFGGGSIT
QLDTVARALQ RFRAHGKPIY AYAPDYSQDA YLLAAQANHI YMPRLGTVLI TGFSTRGLYF
KGLLDKLGIT VYSFRQGKYK SAMEPLTLTH MSKSAQVENA AWLKVWWDTY LQDVAKGRGL
KATLVSRYAD QLPELLENYQ GNAAELALKQ GLITRIGDEH AFRQAVAAAL KQPPKHIKKI
GLHAYLAATK PSTTASAKIA VVPIDGMLVT GDAPLPGVVA AQATIKQLDR VGHEASVKAV
VLQVNSPGGD VNAAQAIRAA ILRIRKAHKP VIVSMGTLGA SGAYWLSTAA DRIYAHPTTL
TADIGVFALF PNYAGLLKKL GIHYSGIATT RNANAMSPFS PLGKNVQKAL QAMVDNTYAD
FVNLVANARH IPTNKVEHDA QGRAWSGLDA YHLGLVNALG GMPQAIQEAA KLAKLSKGKY
QVQYLPPPTP SNNIPQWLNM WSLARLRDVI LGENSALHGV IPMEQIRLLI HEAHPYALMA
YLPVK