| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_1730 |
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| Symbol | |
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| ID | 6877712 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011206 |
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| Strand | - |
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| Start bp | 1702595 |
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| End bp | 1704790 |
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| Gene Length | 2196 bp |
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| Protein Length | 731 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642789599 |
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| Product | Tfp pilus assembly protein FimV-like protein |
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| Protein accession | YP_002220159 |
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| Protein GI | 198283838 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3170] Tfp pilus assembly protein FimV |
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| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0317233 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00941699 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATAAGA ACAGGTGGTT GTTGACCATG GCCGGCATTG GTTTGCTTTT GCCGGGTATG
GCGCAGGCGC TGGGACTCGG TGAGCTGCGG GTGCTCTCCG CGCCGGGGGA GCCCTTTCGC
GCGGAGATTC CCCTACAGTC GTTGAACCCC AAAGGCGAAG CGAACCTCAG CGTCGGACTC
GCGCGGGCCA GCGACTTCGC GATGATCGAT CTTCCCAGAT CGGGCGCACT GGATCACTGG
CATTTTACGG TGCGCAGCGG TGATAGGCCG GCGATACTGA TCAACAGTCC CTTGCCGCTC
GCCCAGCCGG AATTGCATTT CCTGGTGCGG CTCGATTGGT CCGGAGGACA GATGGTCCGG
GAGTATACGG CATCCGGTAT CGCGAATAAC GTGGTCCCCG CCGCCGCGCC GCCGGCGTCC
GTTCCGCAGT CCATCGCCTC CCCGATAACG CCGCGGCCCA CCCGCCATAC GGCTGCCGCA
CCCCTCTATC ACGGCTGGGC AAGAGTCAGC CGTTATGGCC CGGTACCGGT CAACGGCTCT
CTTTTTCAGG CCGCGCAGTC CATTGTCAAC AGTAATGCGG TCACCATCGA TCAGGTCATG
GCGGCGCTGC TGAAGGCCAA CCCGCAGGCC TTCAAGGGCG GTAATCCCGA TTACCTCTAT
GCCGGAACCA TGTTGACGGT GCCCAGTCTG GCCCAGGTGC AGTCTGCTTC ACCCGCACAG
GCCAGCGCCT GGTTGTCTGC CCGACAGACG GCGAACAAAC TGTCGGTCGT TGCGGTGGCG
ACTGCGCCGA CGGCCTCCGC TGCTGTAACG AGCGCGGCTC CCGTCAGCGC GCCGGCCGTT
TCTGCGGCAA CTGCGGTCAA ACCCGCCGGG AGCGCGACGC ATCTGGTGCT TTCCAGCGCC
CCTGCCGCAG CGGTGACCGC TCCCGTAGCC AGCGTGGCAC CCCCGGCCAG CCCGCTGCAG
ACGCCGGATG CCATGCTCCG CAGGGATAAT CAGAAGCTGA CGGCGGAAGT GGCCGGCCTG
GGGCAGCGTC TGAGCGCGGA GGAGCGCCTG CTGGCCGCTC AGGGCGCGCA GCTTGCCGCC
CTTTCCCGGG CGGAGGGCAA CAACAGTCTT CCGTTGATCC TGTCGCTGGG CGGAAATCTT
TTGCTGCTCG CCCTGTTCAT CTGGATGTGG CGTCGCCAAA AAGAGGCGGA ACAACGTCAG
CGAGAGATTT CCCAGCGGGT TTCCGTTTTG AGCACTGCGC CTAAAGCGCC CGCAGCGCCA
CCTCAATCCG GGGCGCCTGC CCCGGTGGCT GCCGCTACTG CACCAGCGCC CTTGGCGGTC
GTCACTGCCG GGGGCAGCGC GGCTGCCCAG GCCGGTGCCG CCCCGTCTGC GGATCATGTC
AGAGGCGCCG GAGTGCCCCA TGCCGGTGCC GCCGAAATCG ATCCCGTCGA ACAAGCCGAT
CTTTACCTGA CCTACGGTAA GGCGGAACAG GCGGTCGCCG TGCTCAATGA CGCCCTCGAA
GAAAATCCGC GGCGAAAGGA GCTGTACGTC AAGCTGCTCG ACATTTATGC CAATCTGGAT
CGCCACGAGG AATATCTGGA TCTCGCCGAA CGTATGCGGG GGCGTTTCGG GCCGCACAAT
GGGGCGTGGC AGGAAGTGGC CGCACAAGGG GCGCGACTCT TTCCCGGTAA CGCGCTCTTC
GCCATCTCCG ACGAGGGGGC GGTGGTCGCT TCCGCCCCGG TCGTCGGGGT AGACCAGCCT
GCCCCCGGGG AGGTGTCCCC GGCGCTGGAG CCTCTGGATG TGCTGGATTT CCACTTCGAC
CATACTCCTG CGGGGTCTGC GGCAGGAGAA GCATTGAACG CTTTCCCGGC GGCGGAAAAG
GCCCGTCTCC TGCAGGATAT CGATGAGCAG TTCCGGTTGA TGGAGGAAGC AGGGGCGGAA
ACTGGGGCCC CGGGACCTCG GACAAAACCG GTACTGGAAC TGGCACCGGA CGTCTCGGTA
TCTGCTCCGG CGCCTGCCGG GCCTCCCGCC GTCGGAGCGC CGTCTGGCGG TGTGGATGTT
GCGGATTGGG ATGCCATGGG CACCAAACTT GACCTGGCCA AAGCCTATGT GGAGATGGGT
GACGGTGAAT CGGCACGCGA TCTGCTCGAA GAACTGATCC GGGAAGACAG CGGCGCCCAT
CGGGAAGAAG CCCGGCAGTT GTTGGGAAGT CTTTAA
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| Protein sequence | MNKNRWLLTM AGIGLLLPGM AQALGLGELR VLSAPGEPFR AEIPLQSLNP KGEANLSVGL
ARASDFAMID LPRSGALDHW HFTVRSGDRP AILINSPLPL AQPELHFLVR LDWSGGQMVR
EYTASGIANN VVPAAAPPAS VPQSIASPIT PRPTRHTAAA PLYHGWARVS RYGPVPVNGS
LFQAAQSIVN SNAVTIDQVM AALLKANPQA FKGGNPDYLY AGTMLTVPSL AQVQSASPAQ
ASAWLSARQT ANKLSVVAVA TAPTASAAVT SAAPVSAPAV SAATAVKPAG SATHLVLSSA
PAAAVTAPVA SVAPPASPLQ TPDAMLRRDN QKLTAEVAGL GQRLSAEERL LAAQGAQLAA
LSRAEGNNSL PLILSLGGNL LLLALFIWMW RRQKEAEQRQ REISQRVSVL STAPKAPAAP
PQSGAPAPVA AATAPAPLAV VTAGGSAAAQ AGAAPSADHV RGAGVPHAGA AEIDPVEQAD
LYLTYGKAEQ AVAVLNDALE ENPRRKELYV KLLDIYANLD RHEEYLDLAE RMRGRFGPHN
GAWQEVAAQG ARLFPGNALF AISDEGAVVA SAPVVGVDQP APGEVSPALE PLDVLDFHFD
HTPAGSAAGE ALNAFPAAEK ARLLQDIDEQ FRLMEEAGAE TGAPGPRTKP VLELAPDVSV
SAPAPAGPPA VGAPSGGVDV ADWDAMGTKL DLAKAYVEMG DGESARDLLE ELIREDSGAH
REEARQLLGS L
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