| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_1719 |
|---|
| Symbol | |
|---|
| ID | 6877701 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | - |
|---|
| Start bp | 1691711 |
|---|
| End bp | 1693060 |
|---|
| Gene Length | 1350 bp |
|---|
| Protein Length | 449 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642789588 |
|---|
| Product | protein of unknown function DUF21 |
|---|
| Protein accession | YP_002220148 |
|---|
| Protein GI | 198283827 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1253] Hemolysins and related proteins containing CBS domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.444984 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.388918 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGGGC GGGGGCAGCC TCCCGTGCAT GAGGTGAATG GGCTGCTGCT GGCAGTCCTG
CTGATTTTGC TGAACGGTTT TTTTGTTGCC GCGGAATTCG CCCTGGTGCG GCTGCGGGGT
ACCCACGCCC GGACCCTCGC CCAGGAACAC GGGTTGCGCG GGAGGATTCT CCTGCGCCTG
CACCGACGTC TGGACGCCTA TCTTTCCGCT ACGCAGCTCG GCATCACCAT CGCGTCTCTG
GGTATCGGCT GGGTGGGTGA ACCCAGTCTG GCGCATCTGC TCCAGCCGGT CTTCCGGGCT
GTCGGGCTAA GGGATCCGGT GGCCCTGCGA TCCGTTTCCT TCGCAGCGGG CTTTGTCCTG
ATCTCTTTCT TGGTCATCGT GATCGGGGAA CTGGTGCCCA AGTCACTGGC CATCCGCAAG
GTGGAGCCGG TATCCCTGTG GACCGGCATG CCCCTCTACG CCTTCTACTG GCTGATGTAC
CCGGCGATCT GGGTGCTCAA CGGTGCGACT CGCATCGTTC TGCGCCTCTT TGCGCTGCGG
GTGGATCAAC CCGCTGGCGA TGCGCCCCAT TCCCGCGACG AACTGGCGAT GATCCTCGCT
CTCAGCCAGG CCCAGGGTAC CCTCGGTCAG CGCACTGGAG ATATTCTGGA CCGCACCCTG
GATTTTACGG AACTGACGGC CGGAGACCTG ATGCGCCCTG CTGCCGATAT GGTCTGTCTG
ATGCTGGATG ATAGTCCCGA GGAAATCCGT CAGGTGATGA TGAACCACCG TTTCACCCGC
TATCCGGTAT GCGAAGGGGA TCGCCAGCAT GTGGTCGGCC TGCTCCACGT CAAGGACGCC
TTTGCGGCCC TATCAAGGCA TCCGGATCTG CGCGAGATCA AAAAACTCCT GCGGCCGCTG
CCCGCCGTTG GCAAGGCGCT TCCGGCCATG GACCTGCTCA CCCATTTTCG CTCTGGGCAC
CCGCATTTCG CGCTGGTGGT TGACGATCTG GGTACCATCA CCGGCTTCGT CACGCTGGAC
CATGTGCTGG AGAGTCTGCT CGGCGCCATT CCCGATGAAT TCCGGCACCA GCGTCAGGAG
TGGCAGCGGC AACCCGACGG GAGTTGGGTG GGTTCTGGCA GCCTCTCGTT GTATTCCCTG
GAGCGAAGCC TGCACATCGA TATAGACGAG GAAACGGCGG ATACCATCGG CGGTCTGGTC
ATGCGTCAGC TCGAAAGGGT CCCGGAAGAA GGGGAACGAG TCGCTTTTCC CAGCTTCGAC
GTGGTGGTGC TGCGCAAAAA AGGCCCACGC ATCGTACTGG TGCAGGTGAT CCCCCATCCG
CTACAAACCG AATCAGACTG GCTCTCCTGA
|
|---|
| Protein sequence | MGGRGQPPVH EVNGLLLAVL LILLNGFFVA AEFALVRLRG THARTLAQEH GLRGRILLRL
HRRLDAYLSA TQLGITIASL GIGWVGEPSL AHLLQPVFRA VGLRDPVALR SVSFAAGFVL
ISFLVIVIGE LVPKSLAIRK VEPVSLWTGM PLYAFYWLMY PAIWVLNGAT RIVLRLFALR
VDQPAGDAPH SRDELAMILA LSQAQGTLGQ RTGDILDRTL DFTELTAGDL MRPAADMVCL
MLDDSPEEIR QVMMNHRFTR YPVCEGDRQH VVGLLHVKDA FAALSRHPDL REIKKLLRPL
PAVGKALPAM DLLTHFRSGH PHFALVVDDL GTITGFVTLD HVLESLLGAI PDEFRHQRQE
WQRQPDGSWV GSGSLSLYSL ERSLHIDIDE ETADTIGGLV MRQLERVPEE GERVAFPSFD
VVVLRKKGPR IVLVQVIPHP LQTESDWLS
|
|---|
| |