Gene Lferr_1635 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_1635 
Symbol 
ID6877615 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp1600854 
End bp1601843 
Gene Length990 bp 
Protein Length329 aa 
Translation table11 
GC content53% 
IMG OID642789502 
ProductADP-L-glycero-D-manno-heptose-6-epimerase 
Protein accessionYP_002220064 
Protein GI198283743 
COG category[M] Cell wall/membrane/envelope biogenesis
[G] Carbohydrate transport and metabolism 
COG ID[COG0451] Nucleoside-diphosphate-sugar epimerases 
TIGRFAM ID[TIGR02197] ADP-L-glycero-D-manno-heptose-6-epimerase 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0490195 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.5248e-07 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTATATCG TCACTGGCGG GGCCGGTTTT ATCGGCGCCA ATCTCGTGCA GGCCCTCAAT 
CAACGGGGCA TTACGGATAT TCTCGTCGTC GACCATCTGA GCCGCGCCGA CAAGTTTCTC
AATCTCACCG ATCTGGAAAT TGCCGACTAC ATGGAGGCAG AGGCTTTTCT TCGACTGATA
GAGAACAAAC ATCTGAAGGG TGTCGAAGCC GTTTTCCATG AAGGCGCATG CTCCGATACG
ATGGCGACAG ATGGCCGTTA TGTCATGGAA AACAACTTCA CCTTCAGCAA AGTGCTGCTG
CATTGGTGCC AACATCATGA TGTCCCCTTC CTTTATGCCT CCAGCGCCTC GGTCTACGGC
ATGACTGGTA TCTTTGTCGA GGAGCGCTAC GCCGAATCGC CCCTCAACGT CTACGGATTC
AGCAAGTTTC AGTTCGACCA GTATCTCCGG CAGATCTGGA CGGATTTGCG GGCGCCGGTA
CATGGCTTTC GTTATTTTAA CGTCTACGGT CCACGCGAGT TTCACAAAAA CCGCATGGCC
TCAGTAGCGC TGCATTTTTA CAACCAATAT CGGCTGGACA ATCATGTTCG CCTGTTTGCC
GGGTCTGGCA GCTATGCCGA TGGTGAACAA CGGCGCGATT TCATTTATAT AGACGATGTG
GTTTCCGTCA ACATGCATTT CCTGGATCAC CCGCACAGCG GAATTTACAA TGTAGGCACA
GGACAGGCGC AGAGTTTCAA CGAGATGGCA GTCGCCGTCA TCAATAGCTT GGAGCACCGC
GCTAACCGCC CGACACTGAC CCTGCCCGCA CTGCAGAAAA CGCAGGCCAT TCGTTACGTC
AATATGCCCG AAGCCCTGAA TGGTAAGTAC CAGAGCTTCA CCCAGGCGGA AATCAGTAAA
CTGCGCGGTG CAGGATATGA CAGAACCTTT CTGACCGTGG GACAGGGGGT GGATCGCTAT
GTGCAATGGC TCACGGAACG GACGACCTGA
 
Protein sequence
MYIVTGGAGF IGANLVQALN QRGITDILVV DHLSRADKFL NLTDLEIADY MEAEAFLRLI 
ENKHLKGVEA VFHEGACSDT MATDGRYVME NNFTFSKVLL HWCQHHDVPF LYASSASVYG
MTGIFVEERY AESPLNVYGF SKFQFDQYLR QIWTDLRAPV HGFRYFNVYG PREFHKNRMA
SVALHFYNQY RLDNHVRLFA GSGSYADGEQ RRDFIYIDDV VSVNMHFLDH PHSGIYNVGT
GQAQSFNEMA VAVINSLEHR ANRPTLTLPA LQKTQAIRYV NMPEALNGKY QSFTQAEISK
LRGAGYDRTF LTVGQGVDRY VQWLTERTT