Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_1617 |
Symbol | |
ID | 6877596 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | - |
Start bp | 1577778 |
End bp | 1580888 |
Gene Length | 3111 bp |
Protein Length | 1036 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 642789483 |
Product | heavy metal efflux pump, CzcA family |
Protein accession | YP_002220046 |
Protein GI | 198283725 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3696] Putative silver efflux pump |
TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.634529 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.000529617 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGATTAAAG CGATTATGCG CTGGTGCATG GCCAACTACC TGCTGGTCGT GATCGCCGTT CTGGTGTTGA TCGCCGGCGG TACGCTGGCA GTGATGAATA TCCCTTTGGA GGCTCTCCCG GACATCTCGC CCACCCAGGT CATCGTCAAG ACTTCCTATC CGGGTCAGGC CCCGCAGATC GTTCAGGATC AGGTGACCTA TCCCCTGGAG ACCACCCTGC AGGAGGTGCC CGGCGCCCAG GCCGTGCGCG GCTATTCCAT GTTCGGGGAC TCCTATGTCT ACGTCCTCTT CAAAGGGGGC ACCAGCATCT ATCAAGCCCG CAATCTGGTA CTCCAATACC TGAGCCAGGT GCAGTCCAAG CTGCCGCCGG GAATCACACC GGCCCTGGGT CCGAACAGTT CAGGGGTGGA CTGGATCTTC GAATACGCCC TCAGCGATCC CGGCGGGACG TTGAATCTCG CCCAACTCAC CACTTTGCAG AACTGGTTTC TCAAATACGA GCTGCAGGGC ATCCCCGGCG TCGCAGAGGT GGCCACGGTA GGGGGCATGG TGCAGGAGTA CCAGGTGGTG GTGAACCCCC AGAAACTCCT CGCCTACAAC CTGACTCTGC CGGAAGTGGA GGCCGCCATC CGTGCCGCCA ATGGGGAGAC CAGCGGCTCG GTGGTGGACA TGGGAGAGGC GAGCTATATC GTCCGCACGT CTGGTTATAT TCGCTCCCTG AAAGACCTGG AGGATGCTTC GCTGGGGGTG CGCGACGGCG TGCCCATTAC GCTGCGTCAG GTCGCTCGGG TACAGTTGGG GCCACAGTTG CCCAATGGCA TCGCCGATCT CAACGGCCAG GGTCAGGTGG TGGGCGGAAT CGTGATGATG AACCAGGGTG GCAACGCCTA TACCCTCATC CATCAGATCG AGCGCAAGCT GAAAGAGATC CAGCCCTCCC TGCCCAAGGG CGTGCAGGTC GTCACCACCT ATAGCCAGGC CCCCCTCATC CAGCGCAGCA TTCATACCCT GACCGGCAAG TTGCTGGAAG AGTCCCTGGC GGTGGCGCTC ATTTCTCTGC TCTTCCTGCT GCGCGCGCGT TCGGCGCTGG TGGCCCTCGT TGCCCTGCCA CTGGGGATAC TGGCCGCCCT CCTCATCATG TGGGCCATGG GCATCCCTGC CAACATCATG TCCCTGGGCG GTATCGCCAT CGCCATCGGC GTGATGATGG ATGCCCCTGT GGTCATGATC GAAAACATGC ATAAGCACCT GGAGCAAACC CCTGGCGTCG ATCCCTGGGC GGCGGCAACC GCTGCGGCGG CAGAGGTTGG TCCGGCGCTG TTTTTCTCGC TGATCATCAT CGCCATTTCC TTTCTGCCGG TCTTCGCCCT GGGCGGTGAG GAAGGCAAGC TCTTCGCACC CCTCGCCTTC ACCAAGACAT TTTCCGTGGC GGCCGCCGCC ATGCTCTCCA TAACCGTAGT GCCCATTCTC ATGGCCTGGT TCATCCGCGG TCGCATCCTC CCCGAAAGCA GGAATCCGCT GAACAGACTT TCCACTTTTA TCTACCGGCC AGTGATCCAT ACTGTTCTGC GCGCACCCCG GGCCGTTTTG ATCATCGCCC TGCTGTTCAC CGCGACCCTC TATTACCCCT GGAATCGTCT GGGTTCGCAG TTTATGCCGC CCCTGAATGA AGGATCGCTG CTTTACATGC CCATATTCCA GGACCCCGCC ATCTCCATCG GCGAGGCGGC CATGATCCTG CAGCAAACGG ACCGCATCCT GAAGACCTTT CCCGAGGTGA AAACGGTCTT TGGTCAGGCG GGAAGAGCCC AGACGGCGAC GGATCAGGCA CCACTGTCCA TGTTTGATAC GACCGTCACC CTCAAAGAGC CGGATGAGTG GCCTGTCGGA ATGACGATGC ACAAACTGCA AAATAAAATG AACGAGGCGT TGCGCATTCC AGGTCTGTCC AATGTCTGGA CGCAACCCAT CAAGAACCGG GTAGACATGG TCACCACTGG GCTGACCACG CCCCTCGGCG TCAAGGTGGC CGGTCGGAAC ATCCATACTC TGAACCGCGT GGGGCAAGAG GTTCAAGCGG TTTTGCAGAA GGTACCTGGC ACCCAAAGCG CCTATGCGGC ACGAATCACG GGCGGCCGGT ACATCGTCGT TCATACCGAC CGCATCGCGG CCGCCCGCTA TGGTCTGTCG GTGGCGGATG TGAATCGTTT CGTGGAGACG GCCATTGGCG GTGAAGTTCT GACCACCGCG ATACAAGGGC TGGAACGCTT CCCGGTGAAT CTACGTTACC CTCGGGCACT GCGGCAATCC TTGGCCGCAT TGATGGAAAG CCGGGTCGCG ACACCCAGCG GTGCCCAAAT CCCTCTCGCC CAGGTCGCCG ATCTGCATAT CGAGGGTGGA GCCTCTATGC TCACCAGCGA CAACAGTCGA CTGAACAGTT GGATCTACAT CGACCTGAAG CCCGGCACCA ACATCGGTGC CTATGTACCC CGCGCCAAGG CCGCGATTGC GAAGGACATT CATCTCCCGG GTGCGTACAC ACTCTCCTGG GTAGGCCAGT ATCAGGTCAT GGAGCGAGCC GCCAAGCGCC TGGAACTGGT CATTCCCGCC GTCATTCTGC TGATCGCCCT GCTCCTTTAC TTCAACTTCA AGAACTGGGT GGAGGTGGCC ATCATCCTGC TCACCCTGCC CCTGTCCCTG GTTGGAGGCT TCTGGCTCAT CTACTGGCTG AACTACAAGT TATCGGTGGC GGTGGCAGTG GGTTTTATCG CCCTGGCGGG GGTGGCGGTG GAATTCGGAG TGGTAATGCT GCTTTACCTG GATCAGGCCC TCCTCCGGCG GCAGGCACAT GGTACTTTGC AGACCTGGCA CGACCTTCGG CTTGCCGTCA TCGAGGGGAC CATGCTGCGT CTGCGGCCTC TGGCCATGAC CTTCAACCTG GTAGTGGGTG GTCTCTTGCC CATCATGTTC AGCCATGGTG CTGGTGCCGA TGTGATGAAG CGCATTGCCG CCCCCATGGT GGGTGGTATG TTCAGCGCCG CATGGCTTGC GCTGCTGGTG ATTCCTGCCC TTTATGCGCT ATGGCAGAAG CGGCGATTGG GCCTGCACTG A
|
Protein sequence | MIKAIMRWCM ANYLLVVIAV LVLIAGGTLA VMNIPLEALP DISPTQVIVK TSYPGQAPQI VQDQVTYPLE TTLQEVPGAQ AVRGYSMFGD SYVYVLFKGG TSIYQARNLV LQYLSQVQSK LPPGITPALG PNSSGVDWIF EYALSDPGGT LNLAQLTTLQ NWFLKYELQG IPGVAEVATV GGMVQEYQVV VNPQKLLAYN LTLPEVEAAI RAANGETSGS VVDMGEASYI VRTSGYIRSL KDLEDASLGV RDGVPITLRQ VARVQLGPQL PNGIADLNGQ GQVVGGIVMM NQGGNAYTLI HQIERKLKEI QPSLPKGVQV VTTYSQAPLI QRSIHTLTGK LLEESLAVAL ISLLFLLRAR SALVALVALP LGILAALLIM WAMGIPANIM SLGGIAIAIG VMMDAPVVMI ENMHKHLEQT PGVDPWAAAT AAAAEVGPAL FFSLIIIAIS FLPVFALGGE EGKLFAPLAF TKTFSVAAAA MLSITVVPIL MAWFIRGRIL PESRNPLNRL STFIYRPVIH TVLRAPRAVL IIALLFTATL YYPWNRLGSQ FMPPLNEGSL LYMPIFQDPA ISIGEAAMIL QQTDRILKTF PEVKTVFGQA GRAQTATDQA PLSMFDTTVT LKEPDEWPVG MTMHKLQNKM NEALRIPGLS NVWTQPIKNR VDMVTTGLTT PLGVKVAGRN IHTLNRVGQE VQAVLQKVPG TQSAYAARIT GGRYIVVHTD RIAAARYGLS VADVNRFVET AIGGEVLTTA IQGLERFPVN LRYPRALRQS LAALMESRVA TPSGAQIPLA QVADLHIEGG ASMLTSDNSR LNSWIYIDLK PGTNIGAYVP RAKAAIAKDI HLPGAYTLSW VGQYQVMERA AKRLELVIPA VILLIALLLY FNFKNWVEVA IILLTLPLSL VGGFWLIYWL NYKLSVAVAV GFIALAGVAV EFGVVMLLYL DQALLRRQAH GTLQTWHDLR LAVIEGTMLR LRPLAMTFNL VVGGLLPIMF SHGAGADVMK RIAAPMVGGM FSAAWLALLV IPALYALWQK RRLGLH
|
| |