Gene Lferr_1605 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_1605 
Symbol 
ID6877583 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand+ 
Start bp1565463 
End bp1566563 
Gene Length1101 bp 
Protein Length366 aa 
Translation table11 
GC content59% 
IMG OID642789470 
Product1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 
Protein accessionYP_002220034 
Protein GI198283713 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.517371 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.0810585 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACCATG AATCTCCCAT TCGGCGTCGT AAGACCCGGC AAATTCACGT TGGCAAGGTA 
GCGATCGGCG GCGATGCACC GATCAGCGTG CAAAGCATGA CCAACACCGA GACCCGCGAT 
ATCGCGGCCA CCGTCGCGCA AATCCGGCGC CTGGAGGCGG TAGGTGCCGA CATCGTCCGG 
ATCTCCGTAC CCAGCATGGA TGCTGCGGAG GCATTCAAGA CGATCCGCGC TCAGGTGGAA 
ACCCCACTAG TCGCCGACAT CCACTTCGAT CACCGCATCG CTTTGCAGGT GATGGAAGAT 
GGTGTCGATG GCCTGCGTAT CAATCCCGGA AATATCGGCT CTCTGGACAA AACACGGCTG 
GTGGTGGAAA TGGCCAAGGA CAAGGGGATC CCCATCCGTA TCGGCGTCAA CGCAGGGTCG 
CTGGAGAAGG ATATCCAGGA GAAATATGGG GAGCCGACGC CGGAGGCACT GGTGGAGTCT 
GCCTTGCGTC ATGTGAGCAT TCTGGACGAG TTGAACTTTC ATGATGTGAA GATCAGTGTC 
AAGGCCTCCG ACATTTTTCT CGCTGTGAGC GCTTACCGCC TGCTCTCGGA AAAGGTGGAT 
TACCCGCTGC ATCTCGGTAT CACCGAAGCC GGCGGCCTGC GCTCCGGCAC TGTCAAATCC 
GCTATCGGGC TCGGCCTGCT CCTGCGGGAT GGGATCGGCG ATACCATCCG GGTTTCGCTC 
GCAGCGGATC CCGTCGAGGA GATTCGTGTC GGCTTCGATA TCCTGAAAAG TCTGCACCTG 
CGTCAGAAGG GGATCAATCT GATCGCCTGC CCGTCCTGCT CTCGTCAGGA GTTTGATGTC 
ATCACCACCA TCAATGCCCT GGAAGCGCGT CTGGAAGACA TCCTCGAGCC CATGGACGTT 
TCGGTGATCG GCTGCGTGGT GAACGGCATC GGCGAGGCAA AGGAGGCCGA TATCGGTCTG 
GCGGGCGGTG ACAAGCGCAG CATTCTCTAC TACCGCGGCA AACAGGTCGA CCGGGTGGAG 
AACAACGATA TTGTCGACGT GCTCGAAAAG CGGATTCGTG CGGAAATCGC TGAACGGCAG 
GCGACGCGCC ATGAGGGTTG A
 
Protein sequence
MHHESPIRRR KTRQIHVGKV AIGGDAPISV QSMTNTETRD IAATVAQIRR LEAVGADIVR 
ISVPSMDAAE AFKTIRAQVE TPLVADIHFD HRIALQVMED GVDGLRINPG NIGSLDKTRL 
VVEMAKDKGI PIRIGVNAGS LEKDIQEKYG EPTPEALVES ALRHVSILDE LNFHDVKISV 
KASDIFLAVS AYRLLSEKVD YPLHLGITEA GGLRSGTVKS AIGLGLLLRD GIGDTIRVSL 
AADPVEEIRV GFDILKSLHL RQKGINLIAC PSCSRQEFDV ITTINALEAR LEDILEPMDV 
SVIGCVVNGI GEAKEADIGL AGGDKRSILY YRGKQVDRVE NNDIVDVLEK RIRAEIAERQ 
ATRHEG