Gene Lferr_1559 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_1559 
Symbol 
ID6877534 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp1521815 
End bp1522081 
Gene Length267 bp 
Protein Length88 aa 
Translation table11 
GC content51% 
IMG OID642789422 
ProductRNA chaperone Hfq 
Protein accessionYP_002219988 
Protein GI198283667 
COG category[R] General function prediction only 
COG ID[COG1923] Uncharacterized host factor I protein 
TIGRFAM ID[TIGR02383] RNA chaperone Hfq 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.192347 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000000000337191 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGGCCGGAC AACAAAAAGG ACAGGTCCTT CAGGATCCTT TTCTCAATCT TTTGCGTAAA 
GAACATGTTC CTGTCGCCAT CTATCTGGTG AACGGCATCA AGCTGCAAGG TTTCGTGGAG
TCCTTCGACC AGTTTGTCGT GCTACTGCGC AATAACGTCA GTCAGATGAT TTATAAACAC
GCCATTTCCA CGGTGGTTCC TGGTCGCGAT GTGCGTTTGC CCTTGCCGGA AGCTGAAGGT
GAGAGCAGCA CCGAAGAAGA GGCCTGA
 
Protein sequence
MAGQQKGQVL QDPFLNLLRK EHVPVAIYLV NGIKLQGFVE SFDQFVVLLR NNVSQMIYKH 
AISTVVPGRD VRLPLPEAEG ESSTEEEA