Gene Lferr_1556 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_1556 
Symbol 
ID6877531 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp1517245 
End bp1518033 
Gene Length789 bp 
Protein Length262 aa 
Translation table11 
GC content63% 
IMG OID642789419 
ProductTetratricopeptide TPR_2 repeat protein 
Protein accessionYP_002219985 
Protein GI198283664 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value2.09745e-08 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.03642e-09 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAGACAA AATTTTTTGG AGCCATTGCC ATGCTTTGGC TGCTGGCAGC GCCTGCTGCA 
TGGGCCGAGC CCAGCGTAGC CCAGGTTGCC CAGGCCGTAC AGGCGGGTCA CCTGAGCCAG
GCGCAAGGCA TGATGCGGGA GGTGTTGGCT GCGCATCCGC AATCTGCGGA AGCACAGTAT
GTGGAAGCGC GAATTCTTGC GCGTCAGGGT GACTGGGCCG GGGCCGGCGC GGCTTTGGCG
AAAGCGGAAC AGCTAGCGCC GACCATGCCC TTTGTCAAAC CGCAGGTGTT GACAACTTTT
AAGCAGTCTC TGCAGCGCCA TGTTGACAAA CCGGTCGGCA AAGGCGGTCA CTGGGGTGCT
GTGCTGGCCT TTTTCCTCGG ACTGGTAGCC TTGATCGCGC TGATCTCCAT GCTTCGGCGG
CGGCGCCAAC AGCCCGGGAT GTTGTACCGC GGACAGCCTT CCGGGCCCTT CGGTGGTACG
AATGGGTACG GGCCCAATGG GCCGATGTAT CCCGGCGGGG GTACCATGGG CGGTGGTATG
CCGCAGCAAG GCGGCGGGTT GGGGTCGAGT CTGGCATCCG GCATTGCCAC CGGCGTGGGG
GTGGGGGCAG GACTGGCGGC CGGGCAGGCG CTGGCCGGAA GCCTTTTCGG ACATGGCAGC
GAGGCGGGTA ATGTGGGCAG TGACGGCGGC AATGATGCTC TCGGCCTGAC GAATGACTCC
TGGGGCAACG ATCAACTGGC ATCCAATGAT GATTTCGGTA TGGATGATGG CGGAGACGGC
TGGGGTTAA
 
Protein sequence
MKTKFFGAIA MLWLLAAPAA WAEPSVAQVA QAVQAGHLSQ AQGMMREVLA AHPQSAEAQY 
VEARILARQG DWAGAGAALA KAEQLAPTMP FVKPQVLTTF KQSLQRHVDK PVGKGGHWGA
VLAFFLGLVA LIALISMLRR RRQQPGMLYR GQPSGPFGGT NGYGPNGPMY PGGGTMGGGM
PQQGGGLGSS LASGIATGVG VGAGLAAGQA LAGSLFGHGS EAGNVGSDGG NDALGLTNDS
WGNDQLASND DFGMDDGGDG WG