| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_1225 |
|---|
| Symbol | |
|---|
| ID | 6877198 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | - |
|---|
| Start bp | 1194615 |
|---|
| End bp | 1195808 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642789102 |
|---|
| Product | cysteine desulfurase NifS |
|---|
| Protein accession | YP_002219670 |
|---|
| Protein GI | 198283349 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1104] Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes |
|---|
| TIGRFAM ID | [TIGR03402] cysteine desulfurase NifS |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00000944956 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGACAACA ATGCCACCAC CCGGGTAGAT CCCCAGGTGC TGGAGACCAT TCTTCCCTAC
TTCAGCGAGT ATTACGGCAA CCCCTCCTCC ATGCACAGCT TCGGCGGCGA TGTGGGCAAA
CGTCTGGAAG AAGCGCGCGC CTCCGTACAG GCGCTGCTGG GAGTAGAACA CGACTCGGAA
ATCATTTTTA CTTCCTGTGG GACGGAGTCC GATAACACTG CCATCCTCTC GGCCCTGGCC
ATTCAGCCCA GCCGCCGGGA AATCATCACC AGCGTGGTGG AACACCCGGC CATTCTGTCT
CTCTGTGATC ATCTCGAACG TCATGAAGGC TATAAAGTCC ACTACATTCC CGTGGACCGG
CTTGGGCGCA TCTCCATGGA AGCGTATGCC GCAGCGCTCA GCGAGCAGGT GGCCGTCGTC
TCCATGATGT ATGCCAACAA TGAGACGGGG ACGATCTTCC CCGTCGAAAG CATGGCACGG
ATGGCCAAGG AGAAGGGCGC ACTCTTTCAT ACGGATGCCG TGCAGGCAGT GGGCAAAATT
GCCCTGAACA TGCAGGAATC GGCCATCGAC ATGCTCTCCC TCTCCGGCCA TAAGCTGCAT
GCCCCGAAAG GCGTCGGTGC GCTCTATGTG CGCCGGGGCA CCCGCTACCG ACCCATGCTG
CGCGGTGGTC ACCAGGAACG CGGACGCCGG GCCGGAACGG AAAACACCAC GGGCATTATC
GCCCTGGGGC TGGCTGCAGA CATGGCCCTG GAGCATATGG AGTATGAAAA CACCGTGGTG
CGCGCTTTAA GGGATCGTCT GGAGGCCGGG ATACTGGCGC AAGTGCCCTA TGCTTTCGTC
AATGGCGATC CGGAGCACCG CCTGCCCAAT ACGTCCAGCA TCTCTTTTGA ATACATCGAG
GGTGAAGCCA TTCTGATGCT CCTGAGCCGG GTTGGCATCG CCGCCTCCTC TGGCTCCGCC
TGCACCTCCG GGTCACTGGA GCCGTCCCAT GTGTTGCGCG CCATGGATAT CCCCTATACG
GCGGCGCACG GCACCATCCG TTTCTCCCTG TCCCGGGAGA CCACGGAAGC GGAGGTGGAC
TGGGTGATTG CGCAGACACC ACCCATCGTC GAGCAATTGC GGCGTCTGTC CCCCTACTGG
GGGGCCAATG GCCCCATCCT CACTGATAAC GCCTTTGCAC CCGTATATGC ATGA
|
|---|
| Protein sequence | MDNNATTRVD PQVLETILPY FSEYYGNPSS MHSFGGDVGK RLEEARASVQ ALLGVEHDSE
IIFTSCGTES DNTAILSALA IQPSRREIIT SVVEHPAILS LCDHLERHEG YKVHYIPVDR
LGRISMEAYA AALSEQVAVV SMMYANNETG TIFPVESMAR MAKEKGALFH TDAVQAVGKI
ALNMQESAID MLSLSGHKLH APKGVGALYV RRGTRYRPML RGGHQERGRR AGTENTTGII
ALGLAADMAL EHMEYENTVV RALRDRLEAG ILAQVPYAFV NGDPEHRLPN TSSISFEYIE
GEAILMLLSR VGIAASSGSA CTSGSLEPSH VLRAMDIPYT AAHGTIRFSL SRETTEAEVD
WVIAQTPPIV EQLRRLSPYW GANGPILTDN AFAPVYA
|
|---|
| |