Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_1215 |
Symbol | |
ID | 6877188 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | - |
Start bp | 1184724 |
End bp | 1186052 |
Gene Length | 1329 bp |
Protein Length | 442 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 642789092 |
Product | outer membrane porin |
Protein accession | YP_002219660 |
Protein GI | 198283339 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00000387662 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000000148872 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCAGAAAA ATATCCTTCA TCTGGTGACA GCAGCCAGCC TGATGGGTGC CTTCAACGCC AGTGCCCAGG CCGAAACCCT GTCTCAATTT TTTGCGAAAA GTCATATTGA TGGACAAATC CGTTCCTACT ACTTCAGCCG CCTCTATGGC ACCCCCAACA CCGTCAATGC TTATGCCTAC TCCCTGGCCG GACGCATCAA TGTCGTCACC GCGCCCTTTC TCTCGGGCTT CCGTATCGGC GTCAGTTTTT ACACTGCCAA CGCACTTGGC ACGCAGCCCA GCAATCCGGC CCGGATCGAC AAGACCCTCA TGGGTACCAG TCCTTCCGTC AATGCACTGG GTCAGGCCTA TCTGGAATAT CAGGACAAAT GGATCACCGC CAAGGTAGGC AATCAGTTGG TAGATACCCC CTGGCTGAAC CGGGTCGGTG GGCGGGTGAT TCCCGTCACC TATCAGGGGG TGACCCTGGA GGCCCATCCC TTCAGCGGCC TGCAACTCAG CGCGCTGCGG ATGTTCCGCT GGAAAGACCG CACTACCGAC CAGTTCTACC GGGACAACCT CTATTACCCC GGCCACTATG AGGGTGACTC CCTCTATGGC GGACCCAATG TGCTGCCCGC CGGTACTCCG CCCACCAACG GAGCGCTCGC CTTTGGCGCC CAATATCACG CATATCACGC CGAAACCGCC GCCTGGTTTT ACCAGTTCGA CCAATTCGCC AACATGTTCT ACTGGAGCGG CCACTACGCC CTGCCGACAT CCTTCGTCCT CAAGCCCTTT GTGGATGCGC AGTTCACCCG GGAATGGGGT GCCGGAGAGG CCTTTGCGAG CACCGGCACC ACCCTCTTCG GCCAGCCAGG ACAAGGTGTG AACAGCACCA ACTGGGGTGT AAAAGCCGGT TTTCAGTTCC CCGACGGCAG CCTCTGGTGG GGTTATGATG CTACAGAATT GCATGCCCAC GCCTTGGGCG GCGGCGCCAT TATTTCCCCC TATACCATCG GCTATACGGC AGACCCGCTG TATGTGAACA GCATGATACA GGGCCTGGTC GGCGTGGGTC CGGGACATGG CTGGCGGGTG CGGGCCGCTT ACTGGGTTCT GCCTAAACAA GTCCAACTGA CAGCCGGCTA TTCCCAGTTC ACCACCTATT TTTCCGGCAA TAGCAACTGG ACCCACTTTA ACGTGAGCTA CTTCCCCCAG GGCATGTTCC GGGGGCTGTG CTTGCGGGAT CAGGTGGAGG TGGGGAATGG TGGTGCGGTC GGGCTATTTC CGGGCTCAGG ACAACACTCC TTTGTGTACA ACCGAGTGAT GATGACGTAC CAGTTTTAA
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Protein sequence | MQKNILHLVT AASLMGAFNA SAQAETLSQF FAKSHIDGQI RSYYFSRLYG TPNTVNAYAY SLAGRINVVT APFLSGFRIG VSFYTANALG TQPSNPARID KTLMGTSPSV NALGQAYLEY QDKWITAKVG NQLVDTPWLN RVGGRVIPVT YQGVTLEAHP FSGLQLSALR MFRWKDRTTD QFYRDNLYYP GHYEGDSLYG GPNVLPAGTP PTNGALAFGA QYHAYHAETA AWFYQFDQFA NMFYWSGHYA LPTSFVLKPF VDAQFTREWG AGEAFASTGT TLFGQPGQGV NSTNWGVKAG FQFPDGSLWW GYDATELHAH ALGGGAIISP YTIGYTADPL YVNSMIQGLV GVGPGHGWRV RAAYWVLPKQ VQLTAGYSQF TTYFSGNSNW THFNVSYFPQ GMFRGLCLRD QVEVGNGGAV GLFPGSGQHS FVYNRVMMTY QF
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