Gene Lferr_1016 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_1016 
Symbol 
ID6876985 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp982654 
End bp985191 
Gene Length2538 bp 
Protein Length845 aa 
Translation table11 
GC content60% 
IMG OID642788894 
ProductDNA gyrase, A subunit 
Protein accessionYP_002219465 
Protein GI198283144 
COG category[L] Replication, recombination and repair 
COG ID[COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 
TIGRFAM ID[TIGR01063] DNA gyrase, A subunit 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000000000944183 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGATCGAAT TCGCCAAAGA AACCATTCCT GTCAGTCTCG AAAAGGAGAT GCGCCAGTCC 
TACCTCGATT ACGCCATGAG CGTGATCGTC GGTCGTGCCC TGCCGGACGC CCGCGACGGC
CTCAAGCCAG TGCATCGTCG TGTGCTCTTC GCCATGCACG AGATGAGCAA CGATTGGAAC
AAACCCTACA AGAAGTCGGC GCGTGTCGTC GGCGATGTCA TCGGTAAATA CCATCCCCAC
GGCGATACCG CTGTCTATGA CACGATGGTG CGGATGGCGC AGGACTTTTC CATGCGCTAC
CCGCTCATCG ACGGGCAGGG TAACTTTGGT TCGGTGGATG GCGACAGCCC CGCCGCCATG
CGCTACACCG AAGTGCGTAT GTCCCGCATT GCCCACGAGA TGCTGGCGGA TCTGGAAAAG
GAGACCGTTG ATTTCGGCCC CAACTACGAT GAAAAGGAGA TGGAACCGCT GGTCATGCCA
GCGCGTATCC CCAATCTGCT GATCAATGGC TCGGCGGGCA TCGCGGTCGG TATGGCCACC
AATATCCCGC CCCACAATCT GACGGAAGTG ATCAGTGCCT GTCTGGCGCT GGTGGATGAT
CCCGAGACTC CGGATGAAGA CCTGTTTACC TTGGTCCCGG CGCCGGATTT CCCGACGGCA
GGTTTCATTC ATGGCCGTGC CGGCAGTATC GAAGCCTACC GCACCGGGCG GGGCCGCGTG
GTCATGCGCG CGCGCTGTGA GTTCGAGACG GACAAAAAAT CCAACCGGCA GAGCATCATC
GTCACCGAAC TGCCCTATCA GGTGAATAAG GCCAAGCTCA TCGAGCGCAT CGCCGAGATG
GTCAAGGAAA AGCGTCTGGA AGGCATCAGT GACCTGCGCG ATGAGTCCGA CAAGTCGGGT
ATGCGTATCG CCATTGAACT CAAACGGGAT GCCAATGCCG ATGTGGTGTT GAATAATCTT
TACCAGCACA CGGTCATGCA GAGCGTGTTC AATATCAATA TGGTGGCGCT GCTGGACGGG
GCACCGCGGA CCCTCGGTCT GCGCGATCTG CTGCAGGCCT TCATCCAGCA TCGCCGCGAG
GTGGTCACCC GGCGCACCGT CTTCGAGCTG AAGAAGGCGC GCGATCGCGC CCATATCCTG
GAAGGCCTGG CGGTGGCGCT GGTCAATCTG GACCCGCTCA TCAGCCTGAT CCGGGCGGCG
GCCAGCCCGG CGGAAGCCAA GGCGCAGATG CTGGCGAAGT CCTGGGAGCC GGGCATGGTC
GCGGCGCTGC TGGTCGAACG TGGAGAGCCC TCGGAGGGGA TGCACGCGGA CGGATATCAT
CTGTCCGAAT TGCAGGCCCA GGCCATTCTC GATTTGCGTT TGCACCGTCT GACGGGGCTG
GAGCAGGACA AAATCCGCGA TGAATATCTG GCCTTGCTGG ATCGTATCCG CGAGTTGCTG
GAGATTCTCG GCTCGAAGAC TCGGCTCATG GAGGTCATCC GCGAAGAGCT GGTGGCTATC
CGCGATCAAT ACGGGGATGC CCGGCGCAGC GAGATCGTGG CGGATACCGG TGATATTTCG
ACGGAAGATC TGATTACCGA AGAGGAAATG GTGGTGACCT TCACCCACGC CGGTTATATC
AAGGCGCAGC CGGTGACGGT CTTCAATGCC CAGAGACGGG GTGGCAAGGG CAAGATGGCC
ACCACCACCA AAGAAGAGGA CTTTGTCGAA CGCATGTTCT GCGCTTCGAC CCATGCCTAT
TGTTTGTTCT TCAGCAATCT CGGTAAAGTC TTCTGGCAAA AAGTGTATCA GTTGCCGCAG
GCAGGTCGTG GCGCCAAGGG CAAGCCCATC GTCAACATGC TGTCGCTGGC GCCCACGGAG
CGCATCACCG CCGTGCTGCC GGTGCGTGAC TTTACCGAGG GCCAGTTTGT CTGCATGGTT
ACCTCCCTGG GCGTCGTCAA AAAGACACCG GTCATGGAGT ATTCCCGGCC GCGTAGTCAG
GGGATCAATG CCATCAACCT GGATCCCGGT GATCGTCTGG TCGCCGTTGG CCTCTCTGAC
GGGCAGCGCG AGTTCATGCT CTTTACCCGG CACGGCATGG CGGTGCGCTT CCCCGAGGCG
AAGGTTCGGG CCATGGGTCG CAATGCCCGG GGCGTGCGCG GCATCAGTCT GGAAGAGAAT
GATCGGGTGA TTTCGGCACA GTGGGTGGAC TCCAGTCAGG TGATCCTTAC CACTACGGCC
AATGGGTACG GTAAATTGAC GAAAGTGGAC GAATACCGCC GCACCAACCG GGGCGGGAAG
GGCGTCATTG CCATCCAGAC CAACGAGCGT AATGGCGATG TGGTCGGCGC GCTGGCGGTA
ACGGAGCGGG ATGAATTGAT GCTGGTCTCC GACCACGGCA CCCTGATCCG CATCGCGGTG
AACAGCATCC GCCGCACCGG CCGGAATGCG CAGGGGGTGC GTTTGATTAA TCTGGGCGAG
GGTGAACAAC TCGCGGGACT GGCATTGATT GCCGATACGG ACGAAGAGGA GGGGGAGCAG
ACCGATCTGC CCCAGTAA
 
Protein sequence
MIEFAKETIP VSLEKEMRQS YLDYAMSVIV GRALPDARDG LKPVHRRVLF AMHEMSNDWN 
KPYKKSARVV GDVIGKYHPH GDTAVYDTMV RMAQDFSMRY PLIDGQGNFG SVDGDSPAAM
RYTEVRMSRI AHEMLADLEK ETVDFGPNYD EKEMEPLVMP ARIPNLLING SAGIAVGMAT
NIPPHNLTEV ISACLALVDD PETPDEDLFT LVPAPDFPTA GFIHGRAGSI EAYRTGRGRV
VMRARCEFET DKKSNRQSII VTELPYQVNK AKLIERIAEM VKEKRLEGIS DLRDESDKSG
MRIAIELKRD ANADVVLNNL YQHTVMQSVF NINMVALLDG APRTLGLRDL LQAFIQHRRE
VVTRRTVFEL KKARDRAHIL EGLAVALVNL DPLISLIRAA ASPAEAKAQM LAKSWEPGMV
AALLVERGEP SEGMHADGYH LSELQAQAIL DLRLHRLTGL EQDKIRDEYL ALLDRIRELL
EILGSKTRLM EVIREELVAI RDQYGDARRS EIVADTGDIS TEDLITEEEM VVTFTHAGYI
KAQPVTVFNA QRRGGKGKMA TTTKEEDFVE RMFCASTHAY CLFFSNLGKV FWQKVYQLPQ
AGRGAKGKPI VNMLSLAPTE RITAVLPVRD FTEGQFVCMV TSLGVVKKTP VMEYSRPRSQ
GINAINLDPG DRLVAVGLSD GQREFMLFTR HGMAVRFPEA KVRAMGRNAR GVRGISLEEN
DRVISAQWVD SSQVILTTTA NGYGKLTKVD EYRRTNRGGK GVIAIQTNER NGDVVGALAV
TERDELMLVS DHGTLIRIAV NSIRRTGRNA QGVRLINLGE GEQLAGLALI ADTDEEEGEQ
TDLPQ