| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_0969 |
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| Symbol | |
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| ID | 6876934 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011206 |
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| Strand | + |
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| Start bp | 940548 |
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| End bp | 943469 |
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| Gene Length | 2922 bp |
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| Protein Length | 973 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642788847 |
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| Product | type I site-specific deoxyribonuclease, HsdR family |
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| Protein accession | YP_002219422 |
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| Protein GI | 198283101 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.301095 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCACCC CCTCCGAACA CAAAACCGTC CAATCCCGCA TCCTCCGCTA CGCCGAGGCC
ATCGGTTGGA CCTTTGTGTC CCGCGAGGCA GCCGAGCAGC GGCGCGGGTT TGATCCGGAC
GTGCCGCCCG CCGACCGCGC CAAGAACCGT TCGCTTTTCT TCGACGACCT GCTCGACGCC
AAGCTGCGGG AATTCAACCC GCGCTACGCC GAGGCCGAGG GCGCCTTGCT CGGGCAGTTC
CGCCATCTGC ACGCCGACAT CTACGGCAAC CGGGAATTCG TCGAGCACCT GCGCAACCGG
GGCAAGTTCT TCGACCATGA GGAAAAGCGC GAGCGCGACC TGATCCTGAT CGATTACGAC
GACCCGGCGC GCAATGTTTT TGAGGTCACC GAGGAGTGGG CCTATAACAA CGGCCACTAC
GGCACACGGG AGGATGTGGT CTTTCTCATC AACGGCATCC CGGTGCTGGT GATCGAGTGC
AAGAACGCCA ACAAGGATGA GGCGATTGCC CTGGGGGTGG ATCAGATTCG CCGTTACCAC
CGCGAGACGC CCGAGCTGTT CGTGTCGCAG CAGCTCTTTA CTGCCACCGA CGCCATCGGT
TTTTCCTACG GGGTGAGCTG GAACACGGTG CGGCGGAACA TTTTCAACTG GAAGGACGGG
GAAGTCGGCA AGCTGGAGGC CAAGGTGAAG AGCTTCTGCG CCATCCCGCA GGTGCTCGCC
TTCCTGAAGG ACTACATCGT CTTTGCCGAG AAGGACGAGG AACTCAACAA ATACATCCTG
CGCCAGCACC AGACCGGCGC GGTGGAGGCG GCCGTCAGCC GCGCCCTCGA TCCCCAACGC
ACGCGCGGCT TGGTCTGGCA CACCCAGGGC AGCGGCAAGA CCTTCACCAT GATCAAGGCG
GCGGAGCGGC TGTTCCGCGC GCCCGGTGCG GACAAGCCGA CCGTGCTGCT GATGATCGAC
CGCAACGAGC TGGAAGACCA GATGCTCAAG AACCTCGCCG CGCTCGGCCT GGGCAATCTG
GAGCACGCCA GCAGCATCGC CCGGCTCAAC CAGCTGCTGC GCGACGACTA CCGGGGCATC
ATCGTGACGA TGATCCACAA ATTCCGCGAC ATGCCGGCGG ACTTGAACAC GCGCTCGAAC
ATCTACGTGC TGATCGACGA AGCCCACCGC ACCACCGGCG GCGACCTCGG CAACTTCCTG
ATGGCCGGCC TGCCGAACGC GACCTTTATC GGCTTCACCG GAACACCGGT GGACAAGACA
GTGTATGGCA AGGGCACCTT CAAGACCTTC GGCTGCGAGG ACGACCAGGG CTACCTGCAC
AAGTATTCCA TCGCCGACAG CATCGAGGAC GGCACCACGT TGCCGCTGTA CTACCAGCTC
GCCCCCAACG AAATGCTGGT GCCGCACGAA ACGCTGGACA AGGAGTTCCT GTCGCTGGCC
GAAGCCGAAG GCGTGGCCGA CATCGAGGAA CTGAACAAGA TTCTCGAACG GGCGGTGAAC
CTGAAGAACT TCCTCAAGGG CAAGGAGCGG ATTCAGCACG TGGCGCAATT CGTCGCGGCG
CATTACCGCG AGAACGTCGA GCCGCTGGGC TATAAGGCCT TCCTCGTCGG CGTCGACCGC
GAAGCCTGCG CCCATTACAA GCGCGCCCTC GACCAGTTCC TGCCGCCCGA GTATTCCGAG
GTCGTCTACA CCGGCAGCAA CAACGATTCC AAGCTGCTGA AAGAATTCCA CCTCGACCCG
AAGCGGGAGC GGCAGATTCG CAAGAGCTTC GGCAAGCTCG ACCAGATGCC GAAAATCCTC
ATCGTCACCG AGAAACTGCT CACCGGCTTC GACGCGCCGG TGCTCTACGC CATGTATCTC
GACAAACCGA TGCGCGACCA CACGCTGCTG CAGGCCATCG CCCGGGTGAA TCGCCCCTAC
GAGAACGAAG TGCAGGAGAT GGTGAAGCCC CATGGCTTCG TGCTGGATTT TGTCGGCATC
TTCGACAAGC TCGAAAAGGC GCTGGCCTTC GACAGCGACG AGATCAACGC CATCGTCAAG
GACCTGAAGC TGCTGAAGGT GCTGTTCAAG AACAAGATGG AGTCCAAGGC CCCGGACTAC
CTCGGCCTGA TCGAGCGCAA CTTCAACGAC AAGGACGTCG ATACCCTCAT CGAGCACTTC
CGCGATCCCG AGCGGCGCAA GGAGTTCTTC AAGGAATACA AAGAGATCGA GATGCTCTAC
GAGATCATCT CGCCCGATGC CTTCCTGCGC CCATTCATTG CAGACTATGG CACCTTATCG
GCGATCTACC AGGTCGTCCG CAAGGCCTAC ACCCGAACCG TGATGGTTGA CCGCGAGTTT
CAGGCCAAGA CCAACCATCT GGTGCGGGAG CAGGTGGGCA GTTATGGCGT AGGTGGTTTG
GGTGAGATTG TCGCGATCGA CGGCAATACC ATCGAGCTGA TCAAGAACAA GCGCGGCGGG
GATGGCACCA AAGTCATCAA CCTGATCAAA AGCATTGAAA GGCTTGCCGA GGAGGGCAGC
GATGACCCTT ACCTCATCGC CATGGCGGAG CGCGCGAGGG CTGTGCAGGA GAGCTTCGAG
AGCCGCCAAA CCAGCACTGC CGAGGCGCTG GCCGAATTGC TGCGTGAAGT GGAAGGCAAC
GAAACGCGGA AGAAGGAACA GGCCGAAAAG TCCTTCGATG GCCTGACCTA TTTTGTCTAC
CGCAGCCTGC TCGATGCGAA GATTCAGAAC GCCGAGGCGG TTAGCCGGAA GATTCGCCAC
GCATTCACCG AGTTTCCGAA CTGGAAGCGC AGCGAAAACG CCCTGCGCGA ACTCCGCAAG
AAAGTGACCT TTGCCCTCTT TGCCGAAACG GAGGACCTTG ACCGGGTGAC GGCGATGGTG
GATGAGTTGT TTACCCTGCT GGAAAAGGCG GATCGGATTT GA
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| Protein sequence | MPTPSEHKTV QSRILRYAEA IGWTFVSREA AEQRRGFDPD VPPADRAKNR SLFFDDLLDA
KLREFNPRYA EAEGALLGQF RHLHADIYGN REFVEHLRNR GKFFDHEEKR ERDLILIDYD
DPARNVFEVT EEWAYNNGHY GTREDVVFLI NGIPVLVIEC KNANKDEAIA LGVDQIRRYH
RETPELFVSQ QLFTATDAIG FSYGVSWNTV RRNIFNWKDG EVGKLEAKVK SFCAIPQVLA
FLKDYIVFAE KDEELNKYIL RQHQTGAVEA AVSRALDPQR TRGLVWHTQG SGKTFTMIKA
AERLFRAPGA DKPTVLLMID RNELEDQMLK NLAALGLGNL EHASSIARLN QLLRDDYRGI
IVTMIHKFRD MPADLNTRSN IYVLIDEAHR TTGGDLGNFL MAGLPNATFI GFTGTPVDKT
VYGKGTFKTF GCEDDQGYLH KYSIADSIED GTTLPLYYQL APNEMLVPHE TLDKEFLSLA
EAEGVADIEE LNKILERAVN LKNFLKGKER IQHVAQFVAA HYRENVEPLG YKAFLVGVDR
EACAHYKRAL DQFLPPEYSE VVYTGSNNDS KLLKEFHLDP KRERQIRKSF GKLDQMPKIL
IVTEKLLTGF DAPVLYAMYL DKPMRDHTLL QAIARVNRPY ENEVQEMVKP HGFVLDFVGI
FDKLEKALAF DSDEINAIVK DLKLLKVLFK NKMESKAPDY LGLIERNFND KDVDTLIEHF
RDPERRKEFF KEYKEIEMLY EIISPDAFLR PFIADYGTLS AIYQVVRKAY TRTVMVDREF
QAKTNHLVRE QVGSYGVGGL GEIVAIDGNT IELIKNKRGG DGTKVINLIK SIERLAEEGS
DDPYLIAMAE RARAVQESFE SRQTSTAEAL AELLREVEGN ETRKKEQAEK SFDGLTYFVY
RSLLDAKIQN AEAVSRKIRH AFTEFPNWKR SENALRELRK KVTFALFAET EDLDRVTAMV
DELFTLLEKA DRI
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