| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_0908 |
|---|
| Symbol | |
|---|
| ID | 6876873 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | + |
|---|
| Start bp | 870303 |
|---|
| End bp | 872639 |
|---|
| Gene Length | 2337 bp |
|---|
| Protein Length | 778 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 642788789 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_002219364 |
|---|
| Protein GI | 198283043 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAAT CAAATAAACA CCTTTTAAGG CAGAGCCTGT TGGTAGCAAC AGGACTACTG
GGCAGTTCAC TTCTACCGGT CTACGCAGAA GTGGCCACCC CCACACCGCC TCCGGCCAAA
AAAGTATATA AGATTAAGTC GGTTTCTAAG AATTTGCTGA GAATCGTCGA GAAGGCGGCG
CTTACCCAGG TCAAACCGGT CTATGGTGCA GAAACCGCTC TCATCCCCCA AAAGTTTTTG
GAGGGCCAGG AGTCTACCCA GAATGCCTCG ACCATTCTAA GTTTTGTGCC TGGGGTCAAT
GCCACCAGCA CGAACCCCAT TGGTGTCAAG ACCCATATTT CCGTACGTGG TTTCTCTCAG
ACACAAGTAG GCTACACCTT TGATAATTTG CCCATTGCTG ATTTGTTCAA TGGCGGTTTA
TCCGGAGGTA ATAACAATTA TGCGGATTTG ACGAATCTCA TCCCGGTTAC GCTGGGTGAA
ACCTCCGGCA TCCGGGTGAC CTATGGTACA CCATCGCCAG ATATCAACGC CGTCGGCGCT
ATTGGTGGGA ATATTGATTA TCTGCCGAAG ATTCCATCGG CAAAACGTTA CGAGTCAGTA
TTTGCCGGTT ATGGTTCCTT TAACACGCGC AGCTATGGCG CCGAGATCAA CACCGGCGCA
AACCCTGGTT ATGGCAACCT CCTGTTGAGA TTTTCTTCGC GCCAGACCGC AGGCTACCTG
GACCACAGCC CGGATCGCGA ATATTCCTAC TATGCGGCCT ATGACTTGCC ACAAATTTCG
CCGACTTCCA AGTGGTCAGT CATATTTTTA CTGAACAAGA ATCAGGGCGC GACCGCGGCG
CGAATGCCGG TCGCACTGTT GCAGCAATAT GGACCCTATT ACCAATGGCC GCTGTCTGTT
ACCTATGCGA ATGGTACGGC GGAACATATG ATGGCTATTG TGCAGAATAA AACGCTTATC
TCATCTCACG CCGTTTTTGG TTTCAAGGGA TTTTATGCCT TTACCAACTC CAATCGTTTG
GAGTATGTGA ATCCCAGTGT CAATATGCCT TATAACAGCT TTGTTACCTT TTATCTCAAT
CCGGCACAAA CTGTCTGCCA GTATTCTGGA AATGATTTTG CCGGTAATAA TTCTGCGGCA
TGTCAGGCCC AAACTATTAA CGGAGATAAT TATCATAGTT ACAGCTATAC TACGAATACG
TTCGGATTTA ATCCTTCCGT CGAGTGGCTC AGCCATTATG TGGACTTGAA AGTCGGAGGG
TTAGGTGCAT TCTCTCTGTA TCATTCGCAG AACTATGTTT ATGGAAGCCG GAATGTCCCC
GAAGTGGCCG GTTACAACGA CCTTTGGAAT GAGCACGCAT GGCGCCTGTA CGGTAAGCTC
TATGCGCAAG CCAAAATCAA GCCGACGCGC TCTTTGGCCA TCACCCCCGG TCTGAAATAT
GAGACGGTGA GCACGCATAT AAATGACGTG CCAGGTTACT ACTACGCCGT AGGTGCGAGC
AGTGGCCGCT CTTACGGTGA GGTGAGTCCA TACGCCGGTA TCCAGTATAA GCCGACAAAA
GCGGTAACTC TGTATGCCAA CTATGCGGTT GGGTACAAAT ATCCGAATAT CACCGCGTTC
TATGCGGCTG ATAGCAATGC CACATCGACA TCGCCATCGA CGCCAGTGAC CATAAAGCCG
GAGCAAGTCA ACACGTATCA GTTTGGGGTC GCTTACAAGC ATGATGGTCT TGATGCGAGT
ATTTCTTTAT ATCGTTCAGA CTTCACACAT ACATTCAGTT CCTACTATGA TACAACAACA
GGGTTGACTT ATGAGTACAA TATCGGTTCT TCATCGTATC AAGGCATAAA CATTGCCACT
GCTTACGCAT TAGATAATTA TATATCGATT TATGGGAACT ACTCGCTTCA GGACGCACAT
TACACCTCAA ACTCGTCAAG TGCCTATGGA GTTGCCACCA GCATTGGAGA GCCGCGGGCC
AATACCCCAA CTTATCTTGC GGGTGTGGGG ATAGAAGGTC ATTACATGGG TACGCGCGCC
CGATTGTACG GCAATCTGGT CGGCCCGCAA TATATTGAGG CCAGTACGGG TGCACCAACT
TCTATCAGTA TGCCCGCCTA TGCGACCATG AACTTCAACC TTGCGCATAC CTTTCGAATA
CATCGGTACG GGTTTAAAAA TGTGACGTTC AGTCTGAGCG GGGTGAACCT ATTGAACTCC
GAAGCGTCGG TTCTCGAAAA GCAGTTCCCC TATATTAATA ATCAGCCTGG CAACTACCTC
GTTGCAGAGC CTATGATGCC ACGCTCGTTC TTTGGGACGG TGAAAATAGT ATTTTAA
|
|---|
| Protein sequence | MNKSNKHLLR QSLLVATGLL GSSLLPVYAE VATPTPPPAK KVYKIKSVSK NLLRIVEKAA
LTQVKPVYGA ETALIPQKFL EGQESTQNAS TILSFVPGVN ATSTNPIGVK THISVRGFSQ
TQVGYTFDNL PIADLFNGGL SGGNNNYADL TNLIPVTLGE TSGIRVTYGT PSPDINAVGA
IGGNIDYLPK IPSAKRYESV FAGYGSFNTR SYGAEINTGA NPGYGNLLLR FSSRQTAGYL
DHSPDREYSY YAAYDLPQIS PTSKWSVIFL LNKNQGATAA RMPVALLQQY GPYYQWPLSV
TYANGTAEHM MAIVQNKTLI SSHAVFGFKG FYAFTNSNRL EYVNPSVNMP YNSFVTFYLN
PAQTVCQYSG NDFAGNNSAA CQAQTINGDN YHSYSYTTNT FGFNPSVEWL SHYVDLKVGG
LGAFSLYHSQ NYVYGSRNVP EVAGYNDLWN EHAWRLYGKL YAQAKIKPTR SLAITPGLKY
ETVSTHINDV PGYYYAVGAS SGRSYGEVSP YAGIQYKPTK AVTLYANYAV GYKYPNITAF
YAADSNATST SPSTPVTIKP EQVNTYQFGV AYKHDGLDAS ISLYRSDFTH TFSSYYDTTT
GLTYEYNIGS SSYQGINIAT AYALDNYISI YGNYSLQDAH YTSNSSSAYG VATSIGEPRA
NTPTYLAGVG IEGHYMGTRA RLYGNLVGPQ YIEASTGAPT SISMPAYATM NFNLAHTFRI
HRYGFKNVTF SLSGVNLLNS EASVLEKQFP YINNQPGNYL VAEPMMPRSF FGTVKIVF
|
|---|
| |