| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_0872 |
|---|
| Symbol | |
|---|
| ID | 6876837 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | - |
|---|
| Start bp | 828858 |
|---|
| End bp | 829823 |
|---|
| Gene Length | 966 bp |
|---|
| Protein Length | 321 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 642788754 |
|---|
| Product | alpha/beta hydrolase fold |
|---|
| Protein accession | YP_002219329 |
|---|
| Protein GI | 198283008 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0429] Predicted hydrolase of the alpha/beta-hydrolase fold |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.785883 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAATCCTT TCTGCGCTTT TCATCCGCCC TGGTGGTCGC GGGGTGGTGA CTTTCAGACC
ATCTGGGCGC CCTTTTTTGC GCGCTCGGAT CCTGTCGATT TTCGCCGGGA AATCTGGGAA
ACGCCCGATG GCGACCGGGT CGCCGTAGAC TGGGTGGACG CGTCAGCCGC CGCGCCGGTG
GTCCTGCTCT TTCATGGCCT GGCAAGTAGT TCGCGGGGAC ATTATGCCCG CGCCCTCGCG
GCAGGCCTGC GGCGGAGGGG CTGGGCAGGC TGTTTTATCA ATTTCCGCGG TTGCGGAGGA
ATAGACAACT TACTGCCGCG CAGCTACCAC GCGGGAGATA GTGCCGAGAT TCGCTGGATG
CTGGAGCGCG CGACTGCACT GTTTCCACGT CGCTCTCGCT ACGCCGTCGG TGTTTCCCTC
GGCGGCAACG CCTTGCTCAA ATATCTGGGC GAGGCAGGAG ACGAGGCGCA TAAAAATCTG
GAATCCGCGG CTGCGGTCTG CGCCCCAGTT GATCTGGTCG CGACGGCAGA GTATCTGCAA
TCCGGTCATC TTCGCTTCTA CAACCGGTAT TTTCTCCAGA AAATGAAGGC GTCTGTCCGC
CGTTACGAGG CCAAGTACCC GGACATGGCG GATTGGCCAC GGGTCTTTTC GGCAAAAAGC
GTGTATGATT TCGATGAATA TTTCACGGCG CCAGTACATG GTTTCTCGGG CGCCCGGCAT
CTCTGGGAGG AGGGCTCGGC GGCGCCGTTG TTGCCGCAGA TACAGGTGCC CACTTTGCTT
CTGAACAGCG CGGATGACCC TATTGTACCC GTCGACAGCC TGCGCCATGT TCAGATAAGC
CCGGCCGTGA CACGTTGCAT CACCGAGCAA GGCGGTCATG TTGGCTTTGT AGATGGCGCC
TTTCCGGGTT ATCTGCATTG GTTGCCAAAC ACGCTGCTGG ACTATTTTGA AAGGAGGATC
CCATGA
|
|---|
| Protein sequence | MNPFCAFHPP WWSRGGDFQT IWAPFFARSD PVDFRREIWE TPDGDRVAVD WVDASAAAPV
VLLFHGLASS SRGHYARALA AGLRRRGWAG CFINFRGCGG IDNLLPRSYH AGDSAEIRWM
LERATALFPR RSRYAVGVSL GGNALLKYLG EAGDEAHKNL ESAAAVCAPV DLVATAEYLQ
SGHLRFYNRY FLQKMKASVR RYEAKYPDMA DWPRVFSAKS VYDFDEYFTA PVHGFSGARH
LWEEGSAAPL LPQIQVPTLL LNSADDPIVP VDSLRHVQIS PAVTRCITEQ GGHVGFVDGA
FPGYLHWLPN TLLDYFERRI P
|
|---|
| |