Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_0830 |
Symbol | |
ID | 6876795 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | - |
Start bp | 787135 |
End bp | 788034 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 642788712 |
Product | Patatin |
Protein accession | YP_002219287 |
Protein GI | 198282966 |
COG category | [R] General function prediction only |
COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00263851 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.492745 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTATTG GCCTGGCTCT TGGCAGTGGC GCGGCCCGCG GGTGGGCGCA TATAGGGGTA ATAAACGCGC TGAATGATCA AGGAATCGTA CCGGATATCG TTTGTGGCAC GTCCATAGGC GCGCTGGTCG GCGCATCCTA TGTTTCCAAC AATCTTGAGA AGCTGGAGAA ATGGGTTTGT TCACTGACAA AGTTTGAAAC AGCCAAATTT TTTGCCATCA ACATGTCATT GAATGGTTTT GTCAATAAAG AGCGGCTACA TTATTTTCTC AATAAATATG TGGCAGATGA TGACTCAAAA ATAGAGGATA TAGTTAACAA AAAATATGCA TCGGTAGCAA CCGACTTGCA AACCGGCAGC GAGATCTGGT TGACGGACGG TTCAATTCTG GATGCCGTCT TTTCGTCCAT ATCCATGCCC GGCCTCTTTC CGGCGGTCAA GAACAACGGC AGGTGGCTCA TAGATGGCGG ATTGGTGAAT CCCGTCCCCG TTTCGGTCTG TCGGGCTCTT GGCGCCGATG TGGTTATTGC CGTAACGTTG AACGATGATA TCGTTGGAAA ACATCTTCAA AATAACAAAA TCCTGAAAAC ACAGGATGCC GGCGTTACCG GAAAAATATC AGACCTGATC ACGGCATATA CCGCCTCGAT ATTTCCGGCG ACAGGCGATG AGGAGCAACC ACCCAGCCTC TTTGATGCCA TCGCCGGCTC GGTGAATATC ATGCAGGACA GGATCACCAG GAGTCGCATG GCCGGAGATC CTCCGGATAT CCTGCTTTCT CCAAGGCTGT CCCACATTGG CTTACTGGAG TTTTATCGCG CCGGTGAAGC CATCACGGAG GGGAAAGAAT GCGTAAAGAG CATGTTACCG GAAATACAGC GTGTGTTGGG TATATCCTGA
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Protein sequence | MTIGLALGSG AARGWAHIGV INALNDQGIV PDIVCGTSIG ALVGASYVSN NLEKLEKWVC SLTKFETAKF FAINMSLNGF VNKERLHYFL NKYVADDDSK IEDIVNKKYA SVATDLQTGS EIWLTDGSIL DAVFSSISMP GLFPAVKNNG RWLIDGGLVN PVPVSVCRAL GADVVIAVTL NDDIVGKHLQ NNKILKTQDA GVTGKISDLI TAYTASIFPA TGDEEQPPSL FDAIAGSVNI MQDRITRSRM AGDPPDILLS PRLSHIGLLE FYRAGEAITE GKECVKSMLP EIQRVLGIS
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