Gene Lferr_0741 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_0741 
Symbol 
ID6876705 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp700386 
End bp702239 
Gene Length1854 bp 
Protein Length617 aa 
Translation table11 
GC content60% 
IMG OID642788622 
ProductDEAD/DEAH box helicase domain protein 
Protein accessionYP_002219198 
Protein GI198282877 
COG category[J] Translation, ribosomal structure and biogenesis
[L] Replication, recombination and repair
[K] Transcription 
COG ID[COG0513] Superfamily II DNA and RNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value3.24399e-05 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value8.03743e-11 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGTCTCAAG AAACCGATCT CCGCTTTATT GATTTTGCCC TCGCTGAACC GATCCAAAAA 
GCAGTTACGG AGATCGGCTA TGAACAGCCA TCCCCCATTC AGGCGCAGAG CATTCCGCCT
CTGCTCGAGG GGCGGGACGT TATCGGTCTG GCACAGACCG GCACGGGAAA GACTGCCGCC
TTTGCGCTGC CGTTGCTGAG TCGTGTCGAC CTCGGCTTGC GCGCGCCGCA GTTGCTGGTA
CTCGCGCCGA CTCGTGAACT CGCCATTCAG GTAGCGGAGG CCATGCAAAG TTATGCCAAG
TTCCTCCCCG GATTTCATGT GCTGCCCATC TATGGCGGGC AGGCCATGAC CTTGCAGCTC
AAGCAGTTGC AGCGGGGTGT GCAGGTCGTG GTGGGTACGC CCGGACGCAT TCAGGATCAC
CTGCGCCGCA AAACCTTGCG TCTGGATCAT TTGCAGGCCG TGGTGCTGGA TGAAGCCGAC
GAGATGCTGC GCATGGGCTT TATCGACGCA GTGGAGGATA TCCTCAAACA CACGCCCGAA
GGCCGACAGG TGGCGCTGTT TTCCGCGACC ATGCCGGACG CCATCCGCCG CATCGCCAAG
ACCTATTTAC GCAATCCCTT GGAAATCCGG ATTAAATCGG CGACGACTAC GGTGGCTGCC
ATTCGTCAGC GCTACTGGCA GGTCAGCGGT ACCCACAAGC TGGATGCCCT TACCCGTATT
TTGGAAGTAG AGGAGAGTAA CGCCTGGCTG GTTTTTGTGC GTACCAAAAC GGCGACAGTG
GAGCTGGCGG AGCGCCTGGA AGCGCGCGGC TATGCCTGTG GCGCGCTGAA CGGCGATCTC
AGTCAGGCCA TGCGCGAGCA GACCATTGAG CGATTGAAAG CCGGGACACT GGATATTGTC
GTTGCGACCG ATGTGGCGGC CCGCGGTTTG GATGTCGACC GGATCAGCCA TGTGATCAAC
TATGATATTC CTAATGATAC GGAAGCCTAT GTCCACCGTA TCGGGCGCAC GGGACGTGCC
GGACGTACCG GAGATGCGAT TCTTTTTGTC GCACCACGCG AACGTCACCT GCTGCACGCC
ATCGAGCGCG CGACGGGACA GACGATCACC GCGATGCACC TGCCCAGTAT CGAAGACGTC
GCCGACCGGC GGATGAGCCA GTTCAAGGAT CAGTTGACAG AGGTGCTGAA TAGCCAGGAT
CTGGCAGTCT TTGAAACCCT TATTGCGGAT TATCAGCGGG AAAGCGATGT GGGTTTGGGA
GAAATCGCTG CAGCGCTGGC ATACATGGTG CAGAAGGAAC GGCCCCTGAT TCCCGTTGAA
GCGGAGGTGT CCAGGCCGAT GCGTAGCGAT TCCGCCGGTT CGGGCGCTGG TCGCCCGCCT
TCCTCCCGTC GCCGCGCTGA CGACGAGCGG GGCGCACGGC CACCGCGGGC TGCTGCTGCA
TCGGGGGGAG GCGATGATGT GCCCATGCGT CGTTTCCGGC TGGATGTGGG CGAAAGCCAC
GGTGCGCAGG TCAAGAATAT TGTTGGTGCG ATCGCCAATG AGGCCGGGAT ACCCAGCCGC
AATATTCGCA AGGTACAGAT TAATGCAGAG CACACTACGG TCGAACTTCC TGCGGATATA
CAGCCATCAG TGCTGCAGCA TCTGCAAAAG GTGTGGGTAG CCGGACGGCC GTTGCAGATC
GCCCCGACGG ATGCCGGTGC GTCTGCAGGG CGGGCGTCAG CCCGGCCACG CCCGGCTATC
CATGAAGGGT CGCGGGTACC GCGCAAGATA CTTTCCGCCA GGACGGAAAA AGGTGAGTAT
AAAACCAAGG AGCGTGGCGC TGGGGCCACG AAGCGGAAGA AACCCGCGCG ATAG
 
Protein sequence
MSQETDLRFI DFALAEPIQK AVTEIGYEQP SPIQAQSIPP LLEGRDVIGL AQTGTGKTAA 
FALPLLSRVD LGLRAPQLLV LAPTRELAIQ VAEAMQSYAK FLPGFHVLPI YGGQAMTLQL
KQLQRGVQVV VGTPGRIQDH LRRKTLRLDH LQAVVLDEAD EMLRMGFIDA VEDILKHTPE
GRQVALFSAT MPDAIRRIAK TYLRNPLEIR IKSATTTVAA IRQRYWQVSG THKLDALTRI
LEVEESNAWL VFVRTKTATV ELAERLEARG YACGALNGDL SQAMREQTIE RLKAGTLDIV
VATDVAARGL DVDRISHVIN YDIPNDTEAY VHRIGRTGRA GRTGDAILFV APRERHLLHA
IERATGQTIT AMHLPSIEDV ADRRMSQFKD QLTEVLNSQD LAVFETLIAD YQRESDVGLG
EIAAALAYMV QKERPLIPVE AEVSRPMRSD SAGSGAGRPP SSRRRADDER GARPPRAAAA
SGGGDDVPMR RFRLDVGESH GAQVKNIVGA IANEAGIPSR NIRKVQINAE HTTVELPADI
QPSVLQHLQK VWVAGRPLQI APTDAGASAG RASARPRPAI HEGSRVPRKI LSARTEKGEY
KTKERGAGAT KRKKPAR