| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_0719 |
|---|
| Symbol | |
|---|
| ID | 6876681 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | + |
|---|
| Start bp | 678900 |
|---|
| End bp | 681179 |
|---|
| Gene Length | 2280 bp |
|---|
| Protein Length | 759 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 642788599 |
|---|
| Product | (p)ppGpp synthetase I, SpoT/RelA |
|---|
| Protein accession | YP_002219177 |
|---|
| Protein GI | 198282856 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
|---|
| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.504133 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00000262204 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCTGG CGAGTGAAAG CGAGCCAGGC ACCATGGTGC CGACCCTGCC TCTGACCACA
GGGGTGGGCG ATGTGTTGCG CCTGCCGCCG GTCTCTCCGT CTCTGGAGGA CCCCTGCGCG
CCGCTGCGGG CGTTGCTTCA GCAGTACATG ACGCCAGAAG AAGTGTCGCG CGCACGTGAT
GCCTACGAAT TGGCCGCCAA CGCACATGGC GCACAAACCC GGCGCAGTGG TGAGCCCTAT
ATTCATCATC CCGTGGCGGT CGCCTGCATC CTCGCCGAGC TGCAACTGGA TATTTTCACT
ATTCAGGCGG CCCTGCTTCA TGACGTGATC GAAGATTGCA ATATCAGCAA GGAAAACATC
ACCGAGCGCT TCGGGCCGGA AGTGGCAGAG ATGGTGGATG GGGTCAGTAA GCTGGGGCAG
GTACGTTTTG AAACCCGTGA AGAGGCACAG GCAGAGAATT TTCGCAAAAT GTTTCTGGCC
ATGTCCCGGG ACATCCGGGT CGTGTTGATC AAGCTGGCAG ATCGCTTGCA CAACATGCGC
ACCATGGGCG TGATGACGCC GGAGAAGCGG CGGCGTATTT CCCGGGAAAC CCTCGATATC
TACGCGCCCA TTGCGCAACG CCTGGGTATT CATGCCATTC GCATCGAGCT GGAGGAGCTG
GCCTTCTCCC ACCTTTACCC CAAGCGTTGG CACACGCTCA ATGAGGCCGT AAAGGCCGCG
CGTGGTAACC GTAAGGAAGC GGTGCAGAAA ATTGAGCATG CCCTGGAGGA CCGCCTCCTG
CAGGAGGGCT TCGCCGCCCA GGTCAGTGGC CGTGAGAAAC ACGTCTACAG TATCTACAGA
AAAATGCAGA AGAAGGGTAT GCCCTTCGGT GACATCCACG ACCTCCACGC CTTCCGGATT
ATTGTTGCTG ATGTGGATAC CTGCTATCGC GTTCTGGGTC TGGTTCACAG TCTGTATCGA
CCGATTCCCG GACGTTTCAA AGACTACATC GCCATTCCGA AATCCAATGG ATATCAGTCT
CTGCACACCG TGCTGCTGGG CCCTTTCGGG CATCCGGTAG AGGTGCAGAT CCGCACAGAG
GATATGCACC GGGTCGCCGA GGCGGGGGTG GCTGCACACT GGCTGTACAA GACGGGCTCG
AATAACGCCC ATGCCGAAAT TCAGGCGCGT GCCTGGTTGC AGCGTTTACT GGAACTGCAG
ATACAGGGGG GAGATTCCCA GGAATTTCTG GAAAGCGTCA AGCTCGATCT TTTTCCCGAT
GAGGTCTATG TTTTCACCCC CAAGGGTAAA ATTCTCAGCT TGCCACGGGG TGCGACGGCG
GTGGATTTTG CTTACGCCGT GCATACGGAT ATCGGTGACC AGGCCGTGGC GGCCAGAGTC
AATGATATGT ACGTTCCCTT GCGCAGTCCT CTGAACAACG GCGATAAAGT GGAAATCGTC
ACGGCGGCCT CGGCGCACCC GCAACCCGGT TGGCTGGATG TGGTGGTGAC CGGCAAGGCG
CGCAGCAGCG TTCGCGCTTA TCTCAAGACC ATTCAGCGTG GCGACGCGGA AGTGCTGGGT
CGCAATTTGC TGGAAAAGGC GCTGCAGAGT CTGGGTGCCG ACCTCCAGCA GATCGAAGCG
ACTGATTTTC AGCGGGTGCT GGTGACGTTC AACGTGCAGG ATGAGAGCCA GCTGTTGGCG
GCCATTGGCA TGGGTGAGGT TTTTCCGCTG GTCGTAGCGC ACAAGCTGCT GCCCGAGGAG
GGCGATCGCG GGCGGCTGGC GCAGACTGCC CGCCGTCTGG GCCATGCCGT CAGCCAGCTC
CTGCCAAGTC GCCTCAGTCG CGAGGAGGCC ACGAAAAAGC CCTTGCTGAT TCGGGGGACG
GAAGGTATGC CAGTGACCCT GGCTCGTTGC TGTCGTCCCA TCCCTGGCGA CCCTATTTTG
GGTTTCATCA GTGTCGGCAA GGGTGTGGTG GTACATACCC ATGATTGTCA CAATATTCGC
GAGTGGCGCA AACGCCGTGA CCGCTGGGTG GACGTGCAAT GGGATCCCGC AGCCCAAGGC
GAGTTCCCGG TCGCGATCCG GGTGGTTGCG GAGAGCGCCC GCGGCGTACT GGCGCGCATT
GCCACCCTGA TTTCCGATGA GGATTCCAAC ATCGATCATG TGGATATCGA GCCGCAGGAT
GGACTCTACA CGGGCATCAC ATTTACCATA GAGGCGCATG ACCGCGACCA CCTGGCCAGA
ATCATGCGGA GTTTGCGCAG TTTGCCCATG GTGTCGCGGG TACAGCGGGT CAAAGGCTAA
|
|---|
| Protein sequence | MPLASESEPG TMVPTLPLTT GVGDVLRLPP VSPSLEDPCA PLRALLQQYM TPEEVSRARD
AYELAANAHG AQTRRSGEPY IHHPVAVACI LAELQLDIFT IQAALLHDVI EDCNISKENI
TERFGPEVAE MVDGVSKLGQ VRFETREEAQ AENFRKMFLA MSRDIRVVLI KLADRLHNMR
TMGVMTPEKR RRISRETLDI YAPIAQRLGI HAIRIELEEL AFSHLYPKRW HTLNEAVKAA
RGNRKEAVQK IEHALEDRLL QEGFAAQVSG REKHVYSIYR KMQKKGMPFG DIHDLHAFRI
IVADVDTCYR VLGLVHSLYR PIPGRFKDYI AIPKSNGYQS LHTVLLGPFG HPVEVQIRTE
DMHRVAEAGV AAHWLYKTGS NNAHAEIQAR AWLQRLLELQ IQGGDSQEFL ESVKLDLFPD
EVYVFTPKGK ILSLPRGATA VDFAYAVHTD IGDQAVAARV NDMYVPLRSP LNNGDKVEIV
TAASAHPQPG WLDVVVTGKA RSSVRAYLKT IQRGDAEVLG RNLLEKALQS LGADLQQIEA
TDFQRVLVTF NVQDESQLLA AIGMGEVFPL VVAHKLLPEE GDRGRLAQTA RRLGHAVSQL
LPSRLSREEA TKKPLLIRGT EGMPVTLARC CRPIPGDPIL GFISVGKGVV VHTHDCHNIR
EWRKRRDRWV DVQWDPAAQG EFPVAIRVVA ESARGVLARI ATLISDEDSN IDHVDIEPQD
GLYTGITFTI EAHDRDHLAR IMRSLRSLPM VSRVQRVKG
|
|---|
| |