| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_0684 |
|---|
| Symbol | |
|---|
| ID | 6876646 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | - |
|---|
| Start bp | 636523 |
|---|
| End bp | 638052 |
|---|
| Gene Length | 1530 bp |
|---|
| Protein Length | 509 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642788564 |
|---|
| Product | phosphoglyceromutase |
|---|
| Protein accession | YP_002219142 |
|---|
| Protein GI | 198282821 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0696] Phosphoglyceromutase |
|---|
| TIGRFAM ID | [TIGR01307] 2,3-bisphosphoglycerate-independent phosphoglycerate mutase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.00113328 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATTCAAA AACCACGTCC GGTGTTGCTC CTGATCCTCG ATGGATGGGG CTACCGGGAG
GATTCCGAAG ATAACGCCAT TGCCCAGGCG CGCACGCCAA ACTGGGATGG CTGGTGGCAA
AATTGTCCCC ATGGTCTCAT CAACGCTTCC GGGGCTTCTG TGGGGCTTCC CGGCGGACAG
ATGGGCAACA GCGAAGTCGG GCATATCAAT ATCGGAGCAG GCCGCGTGGT GTACCAGGAG
TACGAGCGCG TGAATCTCGC CATCGCCGAC GGCAGTTTCT ACTCCAACAG CGCCCTCTGT
GCAGCGGTGG ATGCCGCCGA GGCACAGGGC GGTGCCGTCC ATATCCTGGG TCTGCTTTCA
GCGGGTGGGG TGCATTCTCA CGAAGAACAT ATCCTCGCCG CGCTACGTCT GGCGCGGGGC
CGGGGCGCTG AACGGGTCTA TGTGCATGCC TTTCTGGACG GTCGCGATAC CCTGCCGCGC
TGCGCGGAGT CATCTCTGAA ACGACTGGAT GCCGAGATAA ACACCTACGG TGGCGCTCTG
GCCTCGGTGA TCGGCCGCTT TTACGCCATG GATCGTGACC ACCGCTGGGA TCGGGTCCAG
CAGGCCTATG ATCTGCTTAC CCTCGGCAAG GGAGAGCACT ATGCCACGGG TTTAGAGGCG
CTTGGTGCCG CCTACCTCCG TGGCGAAAGC GACGAGTTTG TCGCCCCATC GTGGATTGGT
GCCAACCCCG CCTGCATCGG CGATCACGAT GCAGTGTTAT TCATGAACTT TCGCTCCGAT
CGCGCCCGCC AGATCACCCG GCCGTTTGTC GAGGCAGACT TCGACGGCTT CGCCCGACAG
GTCAAACCCC AACTCGCAGG CTTCGTCACC CTCACGGAAT ACAGTGAGCA TTTTGATGCA
CTGGTCGCAT ACCCCCCCAC TCGTCTGAAA AATACCTTTG GCGAATGGGT ATCCCAATTC
GGCCTGCATC AGTTGCGCAT TGCCGAAACC GAAAAGTACG CCCATGTCAC CTTTTTCCTG
AGTGGCGGTG ACGAACGGAT ATTCCCCGGC GAAGATCGCG TATTGATTCC GTCTCCCAAG
GTCACCACCT ACGATCTGCA ACCGGAAATG AGCGTGAATG AACTGACCGA TGCCCTGGTC
GCCCGCGTTG AAAGTCGCCA GTACGATACC ATCATCTGCA ATATCGCCAA TCCCGATATG
GTCGGCCACA GTGGTAAACT GGCTGCGGCC ATTGCCGCGG TCGAGGCGGT AGACCGCAGC
CTCGGGCGTA TTGTCAGCGC CGTGCGCGCC GTCGGCGGCG AAGCGCTGAT CACAGCGGAT
CATGGCAATG TCGAGCAGAT GCTGGATGTC GGGAGCGGCC AGGCGCACAC CTCTCACACC
TGTAACCCGG TGCCTCTGCT CTACATCGGA CGCCCTGCAA AGATTATATC CGGGGGGGCA
CTGGAGGATC TCGCGCCCAC CCTGCTCCGG CTCATGGGCT TGCCGGTGCC TCCTGAAATG
GGCGGCAAAA ACCTGGTGCA GTTCCTCTGA
|
|---|
| Protein sequence | MIQKPRPVLL LILDGWGYRE DSEDNAIAQA RTPNWDGWWQ NCPHGLINAS GASVGLPGGQ
MGNSEVGHIN IGAGRVVYQE YERVNLAIAD GSFYSNSALC AAVDAAEAQG GAVHILGLLS
AGGVHSHEEH ILAALRLARG RGAERVYVHA FLDGRDTLPR CAESSLKRLD AEINTYGGAL
ASVIGRFYAM DRDHRWDRVQ QAYDLLTLGK GEHYATGLEA LGAAYLRGES DEFVAPSWIG
ANPACIGDHD AVLFMNFRSD RARQITRPFV EADFDGFARQ VKPQLAGFVT LTEYSEHFDA
LVAYPPTRLK NTFGEWVSQF GLHQLRIAET EKYAHVTFFL SGGDERIFPG EDRVLIPSPK
VTTYDLQPEM SVNELTDALV ARVESRQYDT IICNIANPDM VGHSGKLAAA IAAVEAVDRS
LGRIVSAVRA VGGEALITAD HGNVEQMLDV GSGQAHTSHT CNPVPLLYIG RPAKIISGGA
LEDLAPTLLR LMGLPVPPEM GGKNLVQFL
|
|---|
| |