| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_0554 |
|---|
| Symbol | |
|---|
| ID | 6876516 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | + |
|---|
| Start bp | 517416 |
|---|
| End bp | 518897 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642788437 |
|---|
| Product | NusA antitermination factor |
|---|
| Protein accession | YP_002219015 |
|---|
| Protein GI | 198282694 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0195] Transcription elongation factor |
|---|
| TIGRFAM ID | [TIGR01953] transcription termination factor NusA
[TIGR01954] transcription termination factor NusA, C-terminal duplication |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.557873 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.218927 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCGTG AACTTCTTTA TCTGGCGGAT GCCGTCGCCC ACGAGAAGGA TGTGGACCGG
GAAGTCATTT TCCTGGCCCT GGAGGCATCT CTGGTCTCCG CATCCAAAAA GAAGTATGGG
CAGGACTGGC ATATCGCGGT GGATGTGGAT CGTAAGACCG GAGATTATGT AACCCGTCGG
CTGTGGGAGG TGGTTGCGGA TGATGTCGCG GATTATGACG TGGATCAGCA GATCCGTCTG
AGCGATGCCC GGAAAACCCG CCCCGAAGCG GAGCCGGGTG ACTACCTCGA AGAGGTGTTG
CCACCCGTCG AGTTCGGGCG GATCGCGGCA CAAACGGCCA AACAGGTAAT CGTGCAGAAA
GTGCGGGATG CCGAGCGCGA CCGGATCGTA TCGGACTTTG CGATACGCAA GGGGGATATC
GTCAGTGGTC TGGTCAAACG CATGGAAAAA GGCAACGCCA TCGTCGACAT GGGGCGCGCC
GAGGCCATTC TGCCAAAAGA GGAGATGATG CCGCGCGAGG CCATCCGCCC CGGTGACCGG
GTGAGAGCAC ATCTCCAGGA TGTACGTCGC GTGCAGCGGG GGCCGCAGCT TTTTCTTTCG
CGGACCAGTC CTGAGTTGCT GATCAAGCTG TTCGCCCAGG AAGTGCCGGA AATCGGGAAC
GGGATGATCG AAATCATGGG TGCGGCGCGT GATCCCGGCC TGCGGGCGAA GCTGGCCGTG
CGTTCCAACG ACCCGCGCGT GGACCCCGTG GGGGCTTGTG TGGGCCTGCG CGGTAACCGG
GTACAGACGG TTATCAACGA GTTGAAAGGC GAGCGGATTG ACATTGTGAT CTGGGCAGCC
GATCCGGCCA GCTATGTGAT CAACGCCCTT TCACCCGCGG AAGTGTCCAG CATCGTGGTC
GACGAGAACA CCCACAGTAT GGATGTGGTG GTCGGACCGG AGCACTTGTC CCAGGCCATC
GGGCGGGGCG GTCAGAATGT ACGGCTGGCG ACTCAGTTGA CGGGCTGGAC CATCAACATT
CTGACCGAGG AAGAGGCTCA GGCCAAGCGG GAAGAGGAAG AGTCGACCTT TCTCAACCAC
TTCATCCAGG ATCTGGGTGT GGATGAGGAT CTGGCCGCCC TGCTGGTCAG CGAGGGTTTT
ACCTCCATTG AGGAGGTGGC CTATGTTCCG GTTGCCGAAA TGATGGAAAT CGATGGTCTG
GACGAGAACC TCGTCGGCGA ATTGCGGCGC CGTGCGCGTG ACGTCCTGCT CAACAAGGCC
ATTGCCCAGG AAGAACAGGT GGCGCTCAGT GAACCCGCGG AAGATTTGTT GTCCCTGAAA
GGTATGGATA AGGGTTTAGC GCACTTACTG GCCAGTAAAG GTGTTGTCAC TTCCGAGGAC
CTGGCGGAAC TGGCTGCGAG CGAGCTATGC GAGATGGTCG GTGTGGATGA AGAGCGGGCC
AAGGCTCTCA TTCTGGAGGC GCGTGCGCCC TGGTTTGCTT GA
|
|---|
| Protein sequence | MSRELLYLAD AVAHEKDVDR EVIFLALEAS LVSASKKKYG QDWHIAVDVD RKTGDYVTRR
LWEVVADDVA DYDVDQQIRL SDARKTRPEA EPGDYLEEVL PPVEFGRIAA QTAKQVIVQK
VRDAERDRIV SDFAIRKGDI VSGLVKRMEK GNAIVDMGRA EAILPKEEMM PREAIRPGDR
VRAHLQDVRR VQRGPQLFLS RTSPELLIKL FAQEVPEIGN GMIEIMGAAR DPGLRAKLAV
RSNDPRVDPV GACVGLRGNR VQTVINELKG ERIDIVIWAA DPASYVINAL SPAEVSSIVV
DENTHSMDVV VGPEHLSQAI GRGGQNVRLA TQLTGWTINI LTEEEAQAKR EEEESTFLNH
FIQDLGVDED LAALLVSEGF TSIEEVAYVP VAEMMEIDGL DENLVGELRR RARDVLLNKA
IAQEEQVALS EPAEDLLSLK GMDKGLAHLL ASKGVVTSED LAELAASELC EMVGVDEERA
KALILEARAP WFA
|
|---|
| |