Gene Lferr_0548 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_0548 
Symbol 
ID6876504 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp506396 
End bp507466 
Gene Length1071 bp 
Protein Length356 aa 
Translation table11 
GC content60% 
IMG OID642788425 
Productaromatic hydrocarbon degradation membrane protein 
Protein accessionYP_002219009 
Protein GI198282688 
COG category[I] Lipid transport and metabolism 
COG ID[COG2067] Long-chain fatty acid transport protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.117969 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000578498 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTTGGCTT TGAAGACCCG CCTCGTCCTC GTTACCCTCG GTCTGTTAGT GGCTGCGCAG 
TCCCATGCCG CGGGTTTTGC CGCGCCGACC TCCGTGGTGG GGCTTTCGGA AGCCGGCGCC
ACGGTGGCCG ACGGCGGACC CGTCAGCAGT TTTGCCGACA ATCCCGCAGA TATGGTCTTC
TTTCCGGGTA CCCGGGTGGG TCTGGATATT CTCGCAACGC GCCCAGCTTA CAAGGTGGAT
AACGGCAGTA GCAGCATCGA TGCGAGCAGC AATCTGCAGA TTCTGCCCGA TCTCTTTGTG
ACCCATCGTT TCAATGATCT GCCACTGGCG GTGGGTCTCG GCATCACTTC ACCCTACAGC
ATCAACGCCA CTTGGCCCGC CGGGACCTTT CCCGGACAAT CTTCGCTAAA AAATGACCTG
CGGATCATTG ATGTGAATCC GGGGGTTGCC TATCTGCTGC TCCCCAACCT GAGCGTTGGA
GTGGGTCTGG ATTATTACCA GGCGCTGAGT GCAACCTTTG GCCCGAATTC GGGCACCGGC
GGAGGCGTCG GCGGTAACGT CGGGCTTTTC TACACCACCG AGCGCTTCAA TGCGGGACTC
AGTTATCGCT CCGCGGCCAG CGTTTCGTCG GGCGGCGGCA GCATTGACCT CCCCAGTCGC
GTACAGGCCG GTGTCCGCTA CCGATTTACC CCACGCTTTG CGAGCGAACT GGATGTGGAC
TGGAATGACT GGAGCAATGC CCGGTTACCT GGCTATGGCA GCCTCGGCTG GAAGTCTGCC
TTGGCCTATC GCCTCGGGCT CAGCTATCAT CTGAATCAGA ATCTGGAGCT CCGCGGTGGC
CTCGCCCATG AGGGCAGCCC CGGCAACAGC TCGAGTTTTG ATGCGGCGGT GCCGGGAACC
AGCAGCAATC TGGCCTCCTT CGGGCTGGGT ATCGGTCTGG GCGCATGGCA TTACGACATA
GGTGCCTCCT ATGCCCTCTC CGGCAACACG ACGTCTTATT ACCCCGGCTT TGCAGGCACG
TATAAAGCCA GTATCTTCAA CTTCGGTGCC GCAATTTCCC GGGATTTTTG A
 
Protein sequence
MLALKTRLVL VTLGLLVAAQ SHAAGFAAPT SVVGLSEAGA TVADGGPVSS FADNPADMVF 
FPGTRVGLDI LATRPAYKVD NGSSSIDASS NLQILPDLFV THRFNDLPLA VGLGITSPYS
INATWPAGTF PGQSSLKNDL RIIDVNPGVA YLLLPNLSVG VGLDYYQALS ATFGPNSGTG
GGVGGNVGLF YTTERFNAGL SYRSAASVSS GGGSIDLPSR VQAGVRYRFT PRFASELDVD
WNDWSNARLP GYGSLGWKSA LAYRLGLSYH LNQNLELRGG LAHEGSPGNS SSFDAAVPGT
SSNLASFGLG IGLGAWHYDI GASYALSGNT TSYYPGFAGT YKASIFNFGA AISRDF