| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_0539 |
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| Symbol | |
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| ID | 6876495 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011206 |
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| Strand | - |
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| Start bp | 495093 |
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| End bp | 498443 |
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| Gene Length | 3351 bp |
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| Protein Length | 1116 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642788416 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_002219000 |
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| Protein GI | 198282679 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0291296 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000000346725 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACGCGGC AGTGGCAGCG CCCGCTACTG ATTCTGCTGC CGAACGCCCG CGACGTGGAG
GAATGGCAGC GCGAGTGGCG TTTTTTCGCA CCGGACTTGC CCGCGCCGCT GGTTTTCCCG
GACCGCGAAA TCCTTCCCTA TGACCGCTTG GCGCCGCCGG CAGATGCCAC GGCCACCCGA
CTGGCTACCC TTGCCACCTT GCCGGAATGG CGTGGCGTTT GTCTCGCCCC CCTGTCCGCC
GTCCTGCAAC GCCTGCCACC GCGCAGTTTC CTCGACCAGC ACGCTTTTGT CCTAGCCGTG
GGCGACCACC TGAGTCCGGA AGGTTTTCGC CAGCGCCTGA TCGACGCCGG CTACCGCAAC
GTCAGTGAAG TCTCTGAGGC CGGCGAATTG GCCTGGCGTG GTGGAATCAT CGATCTCTTT
CCCAGCGGTA GCCCCCTGCC CTATCGCATC GAGCTCTTCG ATAGGGTCGT GGAAAGCATC
CGTGCCTTTG ATCCGGAAAC CCAGCGTACC CTGCAAAAGG TCGAGGGGGT CTCTCTGCTC
CCGGCGCGGG AAGTGCCGGT GGACACCGCC GCGCTACAGG AATTTCGCAG CCGCTTCCGC
GCCCGGTTCA GCGGTGACCC GCAACGCGCC GAGATATACC GGGCGGCCAG CCGGGGACAG
GCGCCCCAAG GCGCCGAGCA TTATCTTCCG CTCTTCTTTC CGGAGTGCAG CCACCTGCTG
ATGCACTTTC CCGTAGACGG CGTCGTCTTT CTCCCGCCCG GTCTGGAAGC ATCCGCCCGG
CACATTCGTC AGGACTGGCA GGAGCGCTAT GAGGAACGGA GCCACGACAC GGTGCATCCC
ATACTGCCGC CTGATGAACT GCTCCTCCCC CCCAGTGAAT GGGAAGATGT CCTGCGCGGT
CGGGCGCGGG TATATGGGCA ACAGGAGGGC GATGCGGAGC GTCTGCCGAC CGCTCCCCTC
CCCGATCTTC ATGGCAGCCC GGAAGCGCCA CTAGCCTCAC TGGATACTTT TCTTCGCCAT
CTGCCGACCA CGGGCCGGGT CATCCTCGCC GCTGAATCAC CCGGCCGTCA GGAAGCCCTG
TCGGAACGGC TTGGCAAGAG CGGACTGCTC CCCAGCCGGG TGCATGACTG GCCGGAGTTC
CTGGCCGGTA CGGAACGGAT CGCCATCACC GTAGCACCCC TGGAACGCGG CCTGCTCATC
AAGGAAAATG GCCTGGTCAG ACTGGCGCTG GTCTCCGAGG CGCAGATTTT TGGTGATCGC
GTCTTTGCCC AGCGGCGTAG TGCCAACGCC CGACAGCGCA GCATTGAAGG CTTGGTCCGC
GATCTCGGCG AGTTACAGCC GGGTGATGCC GTTACCCATG AGGAATACGG CATCGGCCGT
TTTCAGGGCA TGGCTACGCC CTTTGCCTCC CAGGGAGACA TCAATGAATA TGTGGTCCTG
GAGTACGCCA ACGGCGATCT CGTCTACGTC CCGGCGGATC ATCTGGATCG TATCGCCCGC
TACGTGGGTA ATGGTGCGAC GGAACCGGTG CTCTCCCGCC TCGGCAGCAA TCACTGGGAA
AAAGTCAAGG CCAAGGCGCG GCAAAAGGCC GTCGATGCCG CCAGCGAACT GCTGGACATC
TATGCTCGTC GCGCGGCGCG CACCGGTCGG GCTTTCCCCG AACCGGATGA CGCCTATTGG
GAATTCGTGT CCCGCTTTCC CTTTGAGGAA ACCCCGGATC AGCAGCAGGC CATTGACGCC
GTCATTGCCG ATATGACCAG CCCCCACCCC ATGGACCGCC TGGTCTGCGG CGATGTCGGC
TTCGGCAAAA CCGAGGTGGC GCTCCGTGCG GCTTTTCTGG CGGCGCACAG TGGTGCGCAG
GTGGCCGTAC TGGTCCCCAC CACCCTGCTC GCCCAGCAGC ATTACGAGAA TTTCCGGAAC
CGCTGCGCCG GGCTGCCCCT GCGGGTGGAA GTGCTCTCCC GTTTCCAGAA TGCCAAAACG
CACAAGCAAG TGCTCACGGC AGTGTCCGTA GGGGAGGTGG ATATCCTGAT CGGCACCCAC
CGCCTGCTGC AAAAGGATGT CGCCTTCCAC GACCTGGGGC TGCTGATTCT GGATGAGGAG
CATCGCTTCG GGGTACGCCA GAAGGAGCGG ATCAAGGCCC TGCGCGCCGA GGTGGATATC
CTCACCCTGA CCGCAACGCC GATCCCCCGC ACTCTCAATC TCTCGCTGGC CGGCCTGCGT
GACTTATCCA TCATCGCCAC GCCACCCCAG CGCCGCCAGC CGGTACGCAC CTTTGTGCAA
ATCTGGGATG ATGCGACGGT GATCGAAGCC TGCCAGCGCG AGCTGCATCG CGGCGGTCAG
GTATATTTTC TGCATAATGA GGTACGCGAC ATCGAGCGCA TGGCGGCCAC ACTGCGCCGC
CTGCTGCCGG AAGCGCGCCT GCGCGTGGCC CATGGCCAGA TGCCCGAGGG CGAACTGGAA
GCGGTGATGC TGGATTTTTA CCATCAGCGC TTCGACATCC TCCTCTGCAC CACCATCATC
GAGTCGGGGA TCGACAACCC CCATGCCAAC ACCATCCTCA TCAACCGCGC CGATAAATTT
GGTCTGGCCC AGCTCCATCA GTTGCGCGGC CGGGTTGGTC GTTCCCATCA ACGCGCCTAC
GCCTACCTGT TCACCCCGGA CCTTCGGGCC ATGAGCGACG ATGCCCGGCG CCGCCTCGAC
GCCATCCAGT CCCTGGAAGA TCTGGGCGTC GGCTTTGCCC TGGCCAGCCA CGATCTGGAA
ATCCGCGGTG CTGGCGAGTT GCTCGGCGAA GAGCAGAGCG GGCACATGGA TGAGGTGGGG
TTCACCCTCT TCATGGAATG GCTGGACGAT GCCGTGGAAG CCATCCGTGC CGGGCGGGAT
CCCCGCAGTC TGGAAGAACA ACGCACGAGC GGTCCCGAGA TCCATCTCAA CACACCGGCG
CTCATCCCCG ACGACTACCT GCCCGACGTG CATTTGCGCC TGCAACTATA CAAGCGCCTC
AGCGATGTGC GCAGTGACAC CGCCATCGGT GAGATCATGG TGGAGATGAT CGACCGCTTC
GGACCCATTC CGGCGCCGGC CCGCACCCTG CTCTGTCAGA CCCGGTTGCG TCTTGTCGCT
ATCCAGACCG GCATTGAACA GATCGATGCC GGCCCCGCCG GTGCCCGCCT GCAATTCGCC
GCCGAAAACC AGGTGGCCCC CGACAAAATC ATCCGGCTCA TCCAGCAACC TCACAGCATC
TACCAACTGG ATGGCGAGCA CCGCCTGCGC ATCCGCCGCG ACCTGCCCGA CGGCGAAGCG
CGCTGTCAGG AATTGCTGCA ACTCATCGAC CAACTGAGGA TTCAACCATG A
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| Protein sequence | MTRQWQRPLL ILLPNARDVE EWQREWRFFA PDLPAPLVFP DREILPYDRL APPADATATR
LATLATLPEW RGVCLAPLSA VLQRLPPRSF LDQHAFVLAV GDHLSPEGFR QRLIDAGYRN
VSEVSEAGEL AWRGGIIDLF PSGSPLPYRI ELFDRVVESI RAFDPETQRT LQKVEGVSLL
PAREVPVDTA ALQEFRSRFR ARFSGDPQRA EIYRAASRGQ APQGAEHYLP LFFPECSHLL
MHFPVDGVVF LPPGLEASAR HIRQDWQERY EERSHDTVHP ILPPDELLLP PSEWEDVLRG
RARVYGQQEG DAERLPTAPL PDLHGSPEAP LASLDTFLRH LPTTGRVILA AESPGRQEAL
SERLGKSGLL PSRVHDWPEF LAGTERIAIT VAPLERGLLI KENGLVRLAL VSEAQIFGDR
VFAQRRSANA RQRSIEGLVR DLGELQPGDA VTHEEYGIGR FQGMATPFAS QGDINEYVVL
EYANGDLVYV PADHLDRIAR YVGNGATEPV LSRLGSNHWE KVKAKARQKA VDAASELLDI
YARRAARTGR AFPEPDDAYW EFVSRFPFEE TPDQQQAIDA VIADMTSPHP MDRLVCGDVG
FGKTEVALRA AFLAAHSGAQ VAVLVPTTLL AQQHYENFRN RCAGLPLRVE VLSRFQNAKT
HKQVLTAVSV GEVDILIGTH RLLQKDVAFH DLGLLILDEE HRFGVRQKER IKALRAEVDI
LTLTATPIPR TLNLSLAGLR DLSIIATPPQ RRQPVRTFVQ IWDDATVIEA CQRELHRGGQ
VYFLHNEVRD IERMAATLRR LLPEARLRVA HGQMPEGELE AVMLDFYHQR FDILLCTTII
ESGIDNPHAN TILINRADKF GLAQLHQLRG RVGRSHQRAY AYLFTPDLRA MSDDARRRLD
AIQSLEDLGV GFALASHDLE IRGAGELLGE EQSGHMDEVG FTLFMEWLDD AVEAIRAGRD
PRSLEEQRTS GPEIHLNTPA LIPDDYLPDV HLRLQLYKRL SDVRSDTAIG EIMVEMIDRF
GPIPAPARTL LCQTRLRLVA IQTGIEQIDA GPAGARLQFA AENQVAPDKI IRLIQQPHSI
YQLDGEHRLR IRRDLPDGEA RCQELLQLID QLRIQP
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