Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_0361 |
Symbol | |
ID | 6876312 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | + |
Start bp | 338099 |
End bp | 338995 |
Gene Length | 897 bp |
Protein Length | 298 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642788234 |
Product | shikimate 5-dehydrogenase |
Protein accession | YP_002218822 |
Protein GI | 198282501 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.746823 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCCCTCCG CTCAGTCTGA CCTCCGGCAT TGCTGGCACC CCGACGGAGG CACTTCCGTC TATGGCATTC TGGGGTTTCC TGTCAACCAC AGCCTCTCGC CGTGGCTGCA TCGTCTCTTC GCGGCGCAGC AGGAACTGGA TCTGGTGTAT GTGCCTTTTC CGGTGCGCGA AGAGGATATC GCCGTGGCAC TGGCCGGTTT GCCGGCGCTC GGGATCCGGG GCGTGAATGT CACGGTCCCG CACAAGGAGG CCGTATTGCC GCTGATGCAG TGGCTCAGCG CGGAGGCGCT GGCCATCGGG GCGGTGAACA CCATCTGTTT CACGCCCTCG GGCATGCAAG GGCACAACAC CGATGCACCG GGATTTTTGC GGGCGCTGGA ACGTGCGACG GGGGACGGCT GGCGGCAGTG TCCGGCGACT GTAATCGGCG CCGGGGGGGC TGCCCGGGCC ATCGTCTACG CCCTCGGCCA TGCCGGATGT CCGGCGATTT ATCTGGCGAA TCGCCACCTG CCGCGTGCCG AAGTTCTGGC GGCGCAGTTT CCCGGCCTCC CGGTGCATCC CATCCCGCTG GACCGGGCGG CATTGTCCGC TGTGTTGCCC CGCAGCAGGT TGCTCGTCAA CACCAGCACG CGAGGCCTGC ACGGCGAGGG CCATCCGGAG CTGGATCTGG CCCGCATGCC CGGGAATGGC AGTGTGTACG ATATCGTCTA TAACCCATTG GAAACGCCCC TGCTGCAAGC CGCCCGGCAA GCCGGGCTGG GTGCGGTGGA TGGGCTGGGT ATGCTGGTGG AGCAGGGCGC GGAGAGTTTT CGAATATGGA CCGGAACATT GCCGCAGACC GCCGCCGTGG AGGAGATATT GCGTCGATGG CTACAAACCC GGAACACATC TCGTTAA
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Protein sequence | MPSAQSDLRH CWHPDGGTSV YGILGFPVNH SLSPWLHRLF AAQQELDLVY VPFPVREEDI AVALAGLPAL GIRGVNVTVP HKEAVLPLMQ WLSAEALAIG AVNTICFTPS GMQGHNTDAP GFLRALERAT GDGWRQCPAT VIGAGGAARA IVYALGHAGC PAIYLANRHL PRAEVLAAQF PGLPVHPIPL DRAALSAVLP RSRLLVNTST RGLHGEGHPE LDLARMPGNG SVYDIVYNPL ETPLLQAARQ AGLGAVDGLG MLVEQGAESF RIWTGTLPQT AAVEEILRRW LQTRNTSR
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