| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_0335 |
|---|
| Symbol | |
|---|
| ID | 6876286 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | - |
|---|
| Start bp | 316938 |
|---|
| End bp | 317774 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642788208 |
|---|
| Product | spermidine synthase |
|---|
| Protein accession | YP_002218796 |
|---|
| Protein GI | 198282475 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0421] Spermidine synthase |
|---|
| TIGRFAM ID | [TIGR00417] spermidine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.404656 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACAG AACTGTGGTA TACCGAGCGC TATGAAGAGC ACGGCGCGGC ATTGAGCCTG
AAAATCCGCG AAGTGCTGCA TCGTGAGCAA AGCCCTTATC AAAATATAGA AATCTTCGAG
ACCGAACAGT TCGGCACCCT CATGACCCTG GACGGTCTGG TCATGGTCAC TGACCGCGAC
AATTTCCTCT ATCACGAAAT GATGAGCCAT CCGGCCCTCT TTACCCACCC GGCACCGAAA
CGGGTGCTGA TCATCGGCGG CGGTGACTGC GGCACCCTGC GCGAGGTGCT GCGCCATCGG
GAAGTGGAAG AAGCCGTGCA GGTGGAACTG GATGAGCGGG TTACCCGCGT CGCCGAGCGT
TTTTTCCCGG AACTCTGCGA GAACAACCAG GATCCCCGAG CCCGTTTCCA TTTTACCGAT
GGAATTACCT GGATCAAAGA GGCGGAAGCG GGACGCTACG ATGTGATCAT CATTGACTCC
ACCGACCCGG TCGGACCGGC GGCTGGACTG TTCGCCACGG ACTTTTACGC AGCCTGTCAC
CATGCGCTGG CCGATCAGGG CGTGCTGGTC GCCCAGTCCG AGTCGCCGCT CCTGCACGCC
GATCTCATCC GCCAATGCCA AAGTCGCATG ACGGAAGCGG GCTTCGACGC AGTGAACAGC
CTGTATTTCC CGCAGTTCTG TTATCCCTCC GGCTGGTGGA GCGCAACATT GGGACGCAAA
GGTCTCGCCA TGGATGCCTT CCGTATCGAT GCCGCCAGGG CCTTTACTGG CACCCGTTAC
TACCACGCTG CCATGCAGCA GGCCGCCCAG GTCGCTCCGG CCTTTCTGCT GCCCTGA
|
|---|
| Protein sequence | MSTELWYTER YEEHGAALSL KIREVLHREQ SPYQNIEIFE TEQFGTLMTL DGLVMVTDRD
NFLYHEMMSH PALFTHPAPK RVLIIGGGDC GTLREVLRHR EVEEAVQVEL DERVTRVAER
FFPELCENNQ DPRARFHFTD GITWIKEAEA GRYDVIIIDS TDPVGPAAGL FATDFYAACH
HALADQGVLV AQSESPLLHA DLIRQCQSRM TEAGFDAVNS LYFPQFCYPS GWWSATLGRK
GLAMDAFRID AARAFTGTRY YHAAMQQAAQ VAPAFLLP
|
|---|
| |