Gene Lferr_0313 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_0313 
Symbol 
ID6876263 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp298560 
End bp299945 
Gene Length1386 bp 
Protein Length461 aa 
Translation table11 
GC content65% 
IMG OID642788185 
ProductFAD linked oxidase domain protein 
Protein accessionYP_002218774 
Protein GI198282453 
COG category[C] Energy production and conversion 
COG ID[COG0277] FAD/FMN-containing dehydrogenases 
TIGRFAM ID[TIGR00387] glycolate oxidase, subunit GlcD 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value3.16331e-05 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAGCATCA GCACCATCAT TCCCGCCCTG CGCGCCGCTC TCGATGCCGA GCGGGTGCGC 
GACGATGCGG AAACCCTCGC CATCTATAGC CGCGACGATA CTCCGGGGAG TTGCATACCC
GTGATGGTGC TCTTCCCGCA CAGCCATGAG GAGGTGCAGG CGATTGTCAG CATTGCCCGC
CGCCATCGTC TGCCCCTTGT TCCGCGCGGA GCAGGTTCCG GGAATGTCGG CGGGGCACAG
CCGGTACCCG GCAGCGCCGT CGTCAGCTTT GAGTGCATGC AAAAAATCTG CGATTACAGC
GCGGTGGACC GTACCATCAC CGTAGAGGCC GGATGTGTCA CTGCCGCGAT CAGTGCCTAT
GTGCAGGCCG ACGGACTGTT TTATCCCCCC GATCCCGGCA GCAACCCCTA CTGCCGCATC
GGTGGCAATC TGGCCATGAA TGCCGGCGGG CCGCACGCCG TAAAATATGG CGTCACCCGC
GATTACGTAC TGGGCCTGCG TGCTGTCACC GGCACCGGCG AAACGCTGTG CTGCGGTGTT
CATACCAGCA AAGGTGTGGT CGGCTATGAC CTGACCCGTC TGCTGGTAGG CAGCGAGGGC
ACCCTTGCCC TCATCACCGA GGCCACCCTG CGCCTGCTCC CCCTCCCCTC GGCCCAGGCC
ACCCTGCGCG CCGTCTATGA CAATACGGCC AACGCCTGCG CGGCGGTGCA GCGGGTGATG
GCACAACACC ATACGCCCAG CGCCCTGGAA CTCATGGACC CCTACGCCCT GGCCGCAGTG
CGCGCCATGG GCGCCGCCAG GGATCTGCCC GAAGGCAGCA ACGCCCTGCT GATGGTCGAG
GTGGATGGCG AGGCGATCAC CATCCCCGAC CAGGTGCAGG CCATCCGCGC CGCTCTGGCG
GGCGAGGGAA GCCTGGAAAT CCTGGAGGCG ACGGACGCGG CGGCCGTCGC CGATCTGTGG
GCGGCGCGCA AATCCCTGTC CCCCGCCACC AAGGCCATGG CACCCCTCAA AATCAACGAG
GACGTGGTCG TGCCGGTCAG CCGCCTGCGC GAATTGCTGG AGGCCATAGA AGGGATCGCA
GCAGAACAGT CCCTGCATAT CGTCAGCTTC GGGCACGCCG GAAACGGCAA CCTGCACGTC
AACTTTCTGG TCCATCCCCA AGATGGCAAT GAAATGCGCC GTGCCAGGCA CGGCCTGCAA
AAGCTCTTTC AGGCCGTACT GACACTGGAT GGAACCCTCT CCGGCGAACA CGGCATCGGC
AGCAGCAAGC GCGCCTATGT CCCCCTGGAA CTGAGCCCGG AAAGCCTGAG CATCCAGCGC
GCCATCAAGC GGATCTTCGA CCCTGATGCC ATTCTCAACC CCGGCAAACT GCTCCCCGAG
ACCTGA
 
Protein sequence
MSISTIIPAL RAALDAERVR DDAETLAIYS RDDTPGSCIP VMVLFPHSHE EVQAIVSIAR 
RHRLPLVPRG AGSGNVGGAQ PVPGSAVVSF ECMQKICDYS AVDRTITVEA GCVTAAISAY
VQADGLFYPP DPGSNPYCRI GGNLAMNAGG PHAVKYGVTR DYVLGLRAVT GTGETLCCGV
HTSKGVVGYD LTRLLVGSEG TLALITEATL RLLPLPSAQA TLRAVYDNTA NACAAVQRVM
AQHHTPSALE LMDPYALAAV RAMGAARDLP EGSNALLMVE VDGEAITIPD QVQAIRAALA
GEGSLEILEA TDAAAVADLW AARKSLSPAT KAMAPLKINE DVVVPVSRLR ELLEAIEGIA
AEQSLHIVSF GHAGNGNLHV NFLVHPQDGN EMRRARHGLQ KLFQAVLTLD GTLSGEHGIG
SSKRAYVPLE LSPESLSIQR AIKRIFDPDA ILNPGKLLPE T