Gene Lferr_0311 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_0311 
Symbol 
ID6876261 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp296660 
End bp297790 
Gene Length1131 bp 
Protein Length376 aa 
Translation table11 
GC content65% 
IMG OID642788183 
Productlipopolysaccharide heptosyltransferase II 
Protein accessionYP_002218772 
Protein GI198282451 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0859] ADP-heptose:LPS heptosyltransferase 
TIGRFAM ID[TIGR02195] lipopolysaccharide heptosyltransferase II 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value2.8657e-05 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGGCCGAGC AACGACCAAA GTTGCAGGAC GATCCCGATG CACACGATGC CGGTACAGCA 
GAACCGCCCT GTAACGAACA TGAAGCCTTT GTTCCGCACA ACACCCGCAT TGCCCACAGC
TACGATCCCG CCCGCCTGCT GCTGATCGGT CCGGCCTGGG TGGGGGATAT GGTCATGGCG
CAGGTATTGT TGCAGGTACT GCGCCGTCGC TGGCCACGCC TGCAGGTGGA TGTCCTGGCG
CCGCCCGCCA GCATTCCGGT GGCGGAACGC ATGCTGGAGG TGCGGCGGGC CATGCCCCTG
TGCATCGACC ACGGTCAACT GGGGTTGCGT CTGCGGCGCC GGACCGCAGC GGAACTGCGC
GCACAGAACT ATGACTGGTC CATCTGCCTG CCCAACAGCT TCAAATCCGC GCTGGTCCCT
TATTGGGCAC ATATCCCGAC CCGCACCGGT TTCAGCGGCG CGGGGCGCCG TTTGCTCCTG
AACGACCGCC GTCGCTTGAA CAAAAAGAAA CTGCTGCGCA CCGTGGACCG CTTCGTTGCC
CTCGGACTGC CGCTACGCCT TCCACAACCC ACGCAACTGC CCGCCCCCCG TTTACAGGTA
AACCGGGCGG CCCTTGCCGC GACCCTGCAG CGGCTGGGCA TAAGCCCACC ACAACAGCCC
TTGGTCGCCC TGGCACCCGG TGCCGAATAT GGTCCGGCCA AGCGCTGGCC GGTGCACCAC
TGGAGTACCC TGGCCCAAGC CCTTATCGAA CGCGGCTATG CCGTGTGGAT TTTCGGCAGC
CCCAAGGATG CAGAAATCAC TCGGGCCATA GCGGCGGTCG TCCCGGAAGC CCTTGACCTG
GGGGGCCGGA CCACTCTGTT GGAAGCTCTG GACCTGCTGT CGCTCGCCCC CCTGACGGTC
AGCAACGACT CTGGTCTGAT GCACGTGGCA GGGGCTGTCG GCAGCCGGGT CATCGCGCTC
TATGGCTCCA CACCCCTCAG CATGACCCCC CCCCTCTCCG CCGGGGCGCA GGCTCTACGC
ATCGACCTGC CCTGCAGTCC ATGCGGAAAG CGCGAGTGTC CACTCCGACA TCACCGCTGT
ATGGAAGATC TCAGGCCGGA ATACGTTCTC CGCCAGATCT TCGGGATATA G
 
Protein sequence
MAEQRPKLQD DPDAHDAGTA EPPCNEHEAF VPHNTRIAHS YDPARLLLIG PAWVGDMVMA 
QVLLQVLRRR WPRLQVDVLA PPASIPVAER MLEVRRAMPL CIDHGQLGLR LRRRTAAELR
AQNYDWSICL PNSFKSALVP YWAHIPTRTG FSGAGRRLLL NDRRRLNKKK LLRTVDRFVA
LGLPLRLPQP TQLPAPRLQV NRAALAATLQ RLGISPPQQP LVALAPGAEY GPAKRWPVHH
WSTLAQALIE RGYAVWIFGS PKDAEITRAI AAVVPEALDL GGRTTLLEAL DLLSLAPLTV
SNDSGLMHVA GAVGSRVIAL YGSTPLSMTP PLSAGAQALR IDLPCSPCGK RECPLRHHRC
MEDLRPEYVL RQIFGI