Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_0127 |
Symbol | rimO |
ID | 6876077 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | - |
Start bp | 119749 |
End bp | 121077 |
Gene Length | 1329 bp |
Protein Length | 442 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642788006 |
Product | ribosomal protein S12 methylthiotransferase |
Protein accession | YP_002218595 |
Protein GI | 198282274 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0621] 2-methylthioadenine synthetase |
TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family [TIGR01125] MiaB-like tRNA modifying enzyme YliG, TIGR01125 |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0233399 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAA TTCCTAGTAT AGGTGTAGTA TCTCTTGGGT GCCCCAAGGC CACGGTGGAC AGCGAGCGCA TCCTCACCCA GTTGCGCGCC GAGGGCTATC TGCTGGTGGG GGATTACGCC AACGCCGATG TGGTCGTCGT CAATACCTGC GGCTTTATCG ACGCGGCGGT GGAGGAATCC CTGGAGGCCA TCGGCGAGGC GCTGGATGAG AACGGCAAGG TGGTGGTCAC CGGTTGCCTG GGTGCCCGCG AGGGCGGCGA CTTTGTGCGC GGCGCCCATC CCAAGGTGCT TGCCGTCACC GGCCCCAACC AGGCTGGCGC CGTGCTCGAC GCGATCCATG CGGCACTCCC TCCGGCCCAC GATCCCTACA CCGATCTGGT GCCGCCCCAG GGCCTGCGCC TGACGCCGCC CCACTACGCC TACCTCAAAA TCTCCGAGGG CTGCAATCAG TCCTGCAGTT TCTGCATCAT TCCCAGCATG CGCGGCAAGC TGGTCAGCCG TGCGCCGGAC GATATTCTGC GCGAGGCCGA GGCGCTGGTG GCGGGCGGCG CCAAAGAACT GCTGGTGATT TCTCAGGACA CCGGCGCTTA CGGGGTAGAC CGCAAATACC GCACCGCCTT TCACAACGGC CGTCCGCTCA AGACCCGCAT CACCGATCTC TGCGCGGCCC TGGGGGAACT CGGCGTCTGG GTGCGTCTGC ACTACGTATA CCCCTACCCG CACATCGACG AACTCCTGCC CCTGATGGCG GAAGGCAAAA TTCTGCCCTA TCTGGATGTG CCCCTGCAGC ACGGCAGTCC GCGCATCCTC AAGGCCATGC GTCGCCCTGC CGCCGCCGAA AAAACCCTCG ACCGGATTCT CGGCTGGCGC CAGGCGGTGC CCGACCTGAT CATCCGCAGC ACCTTCATTG TCGGCTTCCC CGGCGAGACC GATGCGGACT TTGCGGAGTT ACTGGATTTT CTGCGGGCGG CAGAGCTGGA TCGGGTCGGT TGTTTCGCCT ATTCCGCTGT AGAAGGCGCG CCCGCCAACG CGATCGCCGG AGCGGTGCCG GAGCCGGTCA AAGAGGAACG CCGCGCCGCA TTCATGGCCG TGCAGGAAGC CATCAGCCGC CAGCGGCTAC AACGCCGGGT GGGCCAGCGT CAGCGGGTAC TGGTGGATGC AATGGCCCGG GGCGGCAGAG TCATCGCCCG CTCCGCCAGC GATGCCCCGG AGATCGATGG TGTGGTGCAT CTGGGCAAGG CGGCGGGGTT GCAGGTCGGA GACTGGGTGG AGGTGGCGAT CACCCGGGCG GATGCCCATG ATTTATATGG GATGGTGGTG TCGGCCTGA
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Protein sequence | MKKIPSIGVV SLGCPKATVD SERILTQLRA EGYLLVGDYA NADVVVVNTC GFIDAAVEES LEAIGEALDE NGKVVVTGCL GAREGGDFVR GAHPKVLAVT GPNQAGAVLD AIHAALPPAH DPYTDLVPPQ GLRLTPPHYA YLKISEGCNQ SCSFCIIPSM RGKLVSRAPD DILREAEALV AGGAKELLVI SQDTGAYGVD RKYRTAFHNG RPLKTRITDL CAALGELGVW VRLHYVYPYP HIDELLPLMA EGKILPYLDV PLQHGSPRIL KAMRRPAAAE KTLDRILGWR QAVPDLIIRS TFIVGFPGET DADFAELLDF LRAAELDRVG CFAYSAVEGA PANAIAGAVP EPVKEERRAA FMAVQEAISR QRLQRRVGQR QRVLVDAMAR GGRVIARSAS DAPEIDGVVH LGKAAGLQVG DWVEVAITRA DAHDLYGMVV SA
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