Gene Lferr_0065 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_0065 
Symbol 
ID6876014 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp67329 
End bp68030 
Gene Length702 bp 
Protein Length233 aa 
Translation table11 
GC content61% 
IMG OID642787944 
Productprotein TolQ 
Protein accessionYP_002218534 
Protein GI198282213 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0811] Biopolymer transport proteins 
TIGRFAM ID[TIGR02796] TolQ protein 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.566643 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.905632 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCCGC ATAGCATCGC CAACACCGCG CAGTCCCTCT CCCTGGGTCA TCTGGTCATG 
AACGCCAGTT GGGTCGTGCA GGGCATCCTC GCCATACTGA TGATCGCGTC CGTCATCTCG
TGGACCATCA TCTTCCAGAA GTGGGCCATT TTTGCCGCCG CCCAGCGTGC CCTGGAGCGA
TTCGAGAAGC GCTTCTGGAG CGGTGGCGAG ATGAGCCAGA TTTACCAGCA CGTTTCCGGT
AACGCCAACC TGGAAACCGG GGCCGGCAGC ATCTTCTGCG CCGGTTATGA AGAATTCCAG
CGTCAGCGCA ACAAGATTCG TCCCAGCGAT GCCCTCGATG CAGCGCGGCG CGCCATGCGG
GTGGCTCAGA TGCGCGAGGT CGGGCGCCTG GAAAACAATC TCGCCTTTCT TGCCTCCGTA
TCTTCCGTAA GCCCTTTTAT CGGCCTTTTC GGTACCGTCT GGGGCATCAT GACCGCCTTC
ATGAATATCG GCATGGCGGG ACAGGCCACC CTGGCGACGG TGGCGCCTCC CGTCGCCGAA
GCCCTCATCG CCACCGCGGC GGGTCTGTTC GCCGCGATCC CGGCGACCGC AGCCTATAAC
CGCTATATCC ACCAACTGGA CAAGCTCGAC GCGCAATACG AAGTCTTCAT GGACGAGTTC
ACCAACATCC TGCACCGGCA GGTGCCCGAG ACGAAACCAT GA
 
Protein sequence
MDPHSIANTA QSLSLGHLVM NASWVVQGIL AILMIASVIS WTIIFQKWAI FAAAQRALER 
FEKRFWSGGE MSQIYQHVSG NANLETGAGS IFCAGYEEFQ RQRNKIRPSD ALDAARRAMR
VAQMREVGRL ENNLAFLASV SSVSPFIGLF GTVWGIMTAF MNIGMAGQAT LATVAPPVAE
ALIATAAGLF AAIPATAAYN RYIHQLDKLD AQYEVFMDEF TNILHRQVPE TKP