| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_0055 |
|---|
| Symbol | |
|---|
| ID | 6876004 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | - |
|---|
| Start bp | 59118 |
|---|
| End bp | 59774 |
|---|
| Gene Length | 657 bp |
|---|
| Protein Length | 218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642787934 |
|---|
| Product | multiple antibiotic resistance (MarC)-related protein |
|---|
| Protein accession | YP_002218524 |
|---|
| Protein GI | 198282203 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2095] Multiple antibiotic transporter |
|---|
| TIGRFAM ID | [TIGR00427] membrane protein, MarC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0468967 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.907646 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGTGG CCGCTGAACT GCACAGCGCA TTGCAAACGC TCATCGCCCT GCTCGCGATC
CTCAATCCCG TCGGCGCCAT CCCCATTTTC ATTGCCCTGA CCAGCGACGA AGACCCACAA
CAACGACTCG CCACGGCGAA GCTGGCATCG CGCGCCGTCG CCGTGGTGCT GCTCACGTCG
GCGTTCCTGG GGGAATATAT CCTGCAATTC TTCGGGATCA GCATCGCCGC CTTTCAGGTG
GCGGGCGGCA TGGTACTCAT GCTGCTGGCC TTCAATATGT TGCAGGCCAA GTCCAGTCGC
TATCGCCACA CCCCGGAGGA AGCCGCCGAG GGCATGCAGA AAGAGGCCGT CGCCGTAGTC
CCTCTCGCCA TCCCGCTGCT CGCGGGTCCC GGCACCATGG TCACCGTAAT CATTGCCCAT
CACAAAAATG CGTCGTGGCT GGCCAGCGGC CTGCTGATCA TCGACATCCT GGTAATCGCC
GGAGTGGCCT ATGCGGCCCT GCGCCTGGCG GAGCCCCTGT CTCGCCGGCT GGGGGTGACG
GGCATCAACA TCTCTACCCG TATCTTCGGG CTGGTGCTCG CCGCCATTGC GGTGACCTTC
ATCGCCAACG GTCTGGCCGC CTTGTTTCCG GGTCTGGTAC ACATCCGCAT GTCCTGA
|
|---|
| Protein sequence | MPVAAELHSA LQTLIALLAI LNPVGAIPIF IALTSDEDPQ QRLATAKLAS RAVAVVLLTS
AFLGEYILQF FGISIAAFQV AGGMVLMLLA FNMLQAKSSR YRHTPEEAAE GMQKEAVAVV
PLAIPLLAGP GTMVTVIIAH HKNASWLASG LLIIDILVIA GVAYAALRLA EPLSRRLGVT
GINISTRIFG LVLAAIAVTF IANGLAALFP GLVHIRMS
|
|---|
| |