| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_0022 |
|---|
| Symbol | |
|---|
| ID | 6875971 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | + |
|---|
| Start bp | 24103 |
|---|
| End bp | 25398 |
|---|
| Gene Length | 1296 bp |
|---|
| Protein Length | 431 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642787901 |
|---|
| Product | sun protein |
|---|
| Protein accession | YP_002218491 |
|---|
| Protein GI | 198282170 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
|---|
| TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.242982 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAACAG GCATTGAACG GGCAAAAAGC ACATCGGGTG GGGCCGTGCG CAAGGCCGCC
ATTACCGTAT TGCGCGGTGT GGATAGCGGA CAGACGGTGG ATGCCGCGCT GCTGCCGGTT
TCGTTGACCG GTACGGATCG GGCGACCTTG CAATGGTTGG TTCTGGGTAC GCTGCGCGAA
TTTCTGTCCG TACAGGCCCT TTCCGCAAAA TTGTTGCGCA AGCCGTGGCG CGAGGAGGAT
GCCGATCTCG GCTTTCTGCT CAGTCTGGCC CTTTTCGAGT TACGCCACGG CCAACGACCC
GCCTTTGCAG TGGTCAATGA CTGGGTGGAG ATGACAGAGG CCGTCAAAAA ACCGTGGGCG
CGCGGCCTGA TGAATGCCGT CCTGCGCCGT TATCTGCGAG AGCGTGAGGT TTTGGATACA
GCGCTGGTCG ATCGCGATCT CGGGCATCCG GCCTGGTTGG CGGCGCGCTT GCGCGCGGCC
TATCCGCAGG ACTGGCCGGC CATTGCCGCA GCCAATAACA GCGCGCCGCC CCTCTGGCTG
CGGGTGAATA CGCAGCGGGT GGACCCCGGT GCATATCGGC GGTTGCTGGC GGAACAGGGC
CGTGAGGCCG AGGGCGTGAC GTGGAGTGCG GCGGCCTTGT GCCTGCCCGC CAGTGTGCCG
GTAGCGACCC TGCCGGGCTG GGATGCCGGC TGGGTGGCGG TGCAGGACGG CGCGGCACAA
CTGGCGGCCC ACATTCTCGC GCCCCGGGAG GGGGAGCGAA TTCTGGATGC CTGTGCGGCA
CCCGGCGGCA AAACGGCGCA CCTGTGGGCA TTGGGGGCTA CGCGCCTGGA TGCCCTGGAC
CGCTCCGCGG AACGCCTGAA CCGGGTGCGT GAAACTCTGG AAAGACAAGG AGGCGAGGTG
CATTTGCAGG CGGCCGATGC GGCGGAAACC GCCACTTGGT GGAATGGTGA GACCTATGAC
GCCATTCTCC TGGATGCACC CTGTACCGGC ACCGGGGTCA TTCGCCGCCA TCCCGATATT
CGTCTGCGCC GCCAACCGGA AGATGTGGCC GAAGCGGTGG CGCAACAGGC GCGTCTGCTG
GAAGGGTTGT GGCCTTGTCT GCGCCCCGGC GGTCGGTTGC TCTATGCCAC CTGCTCGGTA
TTGCCCGAGG AGAACGAAGA ACAGATCGCC GCCTTTGTTC AGCGGCATTC CGATGCGCGC
CGCATGGCGC ATCCGCTGAC CGGGCAACGC CTGCCCGGCC AGGAAGATAT GGATGGTTTT
TACTATGCCT TGCTGGAGAA GGACGCATGC GCCTGA
|
|---|
| Protein sequence | MRTGIERAKS TSGGAVRKAA ITVLRGVDSG QTVDAALLPV SLTGTDRATL QWLVLGTLRE
FLSVQALSAK LLRKPWREED ADLGFLLSLA LFELRHGQRP AFAVVNDWVE MTEAVKKPWA
RGLMNAVLRR YLREREVLDT ALVDRDLGHP AWLAARLRAA YPQDWPAIAA ANNSAPPLWL
RVNTQRVDPG AYRRLLAEQG REAEGVTWSA AALCLPASVP VATLPGWDAG WVAVQDGAAQ
LAAHILAPRE GERILDACAA PGGKTAHLWA LGATRLDALD RSAERLNRVR ETLERQGGEV
HLQAADAAET ATWWNGETYD AILLDAPCTG TGVIRRHPDI RLRRQPEDVA EAVAQQARLL
EGLWPCLRPG GRLLYATCSV LPEENEEQIA AFVQRHSDAR RMAHPLTGQR LPGQEDMDGF
YYALLEKDAC A
|
|---|
| |