| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_0008 |
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| Symbol | |
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| ID | 6875957 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011206 |
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| Strand | + |
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| Start bp | 11449 |
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| End bp | 13872 |
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| Gene Length | 2424 bp |
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| Protein Length | 807 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 642787887 |
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| Product | fimbrial biogenesis outer membrane usher protein |
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| Protein accession | YP_002218477 |
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| Protein GI | 198282156 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.333359 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00375796 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGGCAGTCC ATGATCAATC GCGCTCCTTC GCGATACGGT TCGCCGCCGC GATCGTCGTC
GCGCTGATCT TGATGGGTGC GGCACAGAGG GCAATAGCTG GCGGTGGTGA GACGCTGCTG
CTCTCCGTAG TGGTCAACGG CTACCATACG GGCAAGATTG GCGAGTTTCG GTTGAACAAA
GGCACGTTGC GCGCTCGGCC ACAAGAGTTG CATGATCTTG GCTTCAAGGT TCCCAAGTCC
ATTCCGGTCG GGACGGATGG CCGCGTCGCC TTGTCCGAAC TTCCCGACTT TGCTTGGCAT
ATCGATCAGG CCACGCAGAC GCTTTACGTC ACGGTGGGCA GCAAACGGCT CTTGCCTCAA
CTCCTGCACA CCGAAACAAG CCCTGCCAGC GAGCTTCCGG TGCAAAGCGG CCTTGGGGCG
ACCCTCGACT ACGATGTCAC CGGCACTTCG GTCGCAGGCC AGAAACTGGG TGCCGGGCAA
TTCAACTTCC GGGCCTTCTC GCCTTGGGGT GTGGCAAGTT CGGGTCTGTT GGCCTATGTC
GGCGGCGGCC CTCAGGGCCT GGGAACAAAC GCCGTAATAC GCCTGAACAG CACCTATACC
TATTCGGATC CGGAAACACT GCGCCGCTAT CGCGTCGGGG ACTTCATTAC CGGTGGTTTG
AGCTGGACCC GTCCGGTCCG CCTGGGTGGC ATACAAATCA GCTCAGACTT CTCTATGCGA
CCTGATCTAA TTACCTTCCC ATTGCCCGGC GTCAGCGGAA CCGTCGCCGT TCCCTCGACG
GTCAACGTGC TGGTCAACGG CATGCAGGTG CTTTCGAGCC AGGTGCGGCC CGGTCCCTTC
GAGATCCCGC AGGTCCCGAT GATCACTGGT GCCGGAACGG TGGTGACGAC GGTGACCAAT
GCGCTCGGGC AACAGGTCAC TACGACCCTG CCGTTCTATG CCAGTGCGAA TCTGCTTGCG
CCTGGACTGC AGACCTTCTC GGCCGGGCTT GGATTCGTGC GGCTCAACTG GGGTTTCCTC
AGCAACGACT ATGGCCCATT GGCCGGATCC ATAACCTTTC GCCGTGGCCT CACGGACGCG
CTGACGGTGG AAGCCCATGC CGAAGGTACG CGGGGAGTGG CCATGGCAGG CGGCGGTATC
GTGGTGAATA TCGACAATCG TGGCGTACTG AATCTTTCCG CCGCAGGCAG TACATCTCAA
GGGCACACCG GTGCGCAGTT CTCCGTCGGG GTCCAGCGCA TCGGCCGTGT TTTCAGCGCT
GGCGCCTCGG CGATCTTTGC CGATCCCGAC TTTCGCGATA TAGCAGCAAT GAACGGAGAT
CCGGTCCCGA CGCGCCAGAT CAGTGCCAAC GTCGGTCTGT CCCTCGGCCG TTTCGGCTCC
TTTGGTATCA GCTATGCCGG TATCGACCGT AATGCCGCAT CGATGCCAAT CCCGGTATAC
GCTCCACCCG GAACCGTGGT GACGGAAGGC GGGGCGCCCG TAAGCGTATA TTATTTCCTG
CCTGCCGAAC ACGCTCATAT CCTTTCGGCC AGCTATTCGC TGCAGATTGG CCCAGTATCG
TTCTACGCCA CGGGCTACCA TGATTTCGCC AATAGTGGCG ACAGTGGTGT GCAGATGGGA
GTGACCATTC CGCTCGGCAG CCGGAGCTCG ATCGGGGGTA GTCTGGCATC CTCTTCGGGA
AACGATTCCG CTCAGGTGCA GCTCATGCAG TCCCCGGTCA CGATCGGGGA CTGGGGCTAT
CAGGCCTACG CCACCACTGG CCGGACCAGC CAGGAATTCG GCCAGTTGCA ATACAAGTCG
CCCTGGGGAC TTGTTTCGGC GGGCGCCAGT CGGATCGACC GGCAAACCCT GGTGCAGGGC
GAGGTACGGG GCGCTCTTTC TTTTATGGAT GGCGGATTGT TCGCGTCCAA CACCATCAAC
AACAGCTTTG CCATCGTTGA TACCGATGGT TTCGGAAATA TTCGCGTCCT GGACGAGAAT
CGGTTGGTTG GGCGAACCGA CTCGGCTGGA CAACTGCTGG TTCCGGACCT GCGCTCTTAC
CAGGCCAACC ATATCGCCAT CGATCCCAAT GATGTGCCGA TCAATGCCAC TCTACCCTAT
GCGACTCGCG ACGTGCGCCC ACCGGACCGG TCCGGTGTTG TCGTGAAGTT CCCCATACGG
GCGAGTTACG GCGCGCTGTT ACGTCTAGTG GATCAATCGG GCAAGAATCT TCCGGTCGGT
AGCGTCGCCA CACTCCAGAA AACCGGTGTC AGTGTCCCGG TCGGCTACGA TGGTGAGGCC
TACGTAGTCA ACCTGAGCCC CCACAATCGG CTGCTTGTCG AGCGGCCGGA TGGGCAACGC
TGCATCGTTA CCTTTACGTA TCATCCCATA GCCGGCACGA TTCCATCGAT TGGCCCCCTA
ACCTGCCGGA AGGACGGACC ATGA
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| Protein sequence | MAVHDQSRSF AIRFAAAIVV ALILMGAAQR AIAGGGETLL LSVVVNGYHT GKIGEFRLNK
GTLRARPQEL HDLGFKVPKS IPVGTDGRVA LSELPDFAWH IDQATQTLYV TVGSKRLLPQ
LLHTETSPAS ELPVQSGLGA TLDYDVTGTS VAGQKLGAGQ FNFRAFSPWG VASSGLLAYV
GGGPQGLGTN AVIRLNSTYT YSDPETLRRY RVGDFITGGL SWTRPVRLGG IQISSDFSMR
PDLITFPLPG VSGTVAVPST VNVLVNGMQV LSSQVRPGPF EIPQVPMITG AGTVVTTVTN
ALGQQVTTTL PFYASANLLA PGLQTFSAGL GFVRLNWGFL SNDYGPLAGS ITFRRGLTDA
LTVEAHAEGT RGVAMAGGGI VVNIDNRGVL NLSAAGSTSQ GHTGAQFSVG VQRIGRVFSA
GASAIFADPD FRDIAAMNGD PVPTRQISAN VGLSLGRFGS FGISYAGIDR NAASMPIPVY
APPGTVVTEG GAPVSVYYFL PAEHAHILSA SYSLQIGPVS FYATGYHDFA NSGDSGVQMG
VTIPLGSRSS IGGSLASSSG NDSAQVQLMQ SPVTIGDWGY QAYATTGRTS QEFGQLQYKS
PWGLVSAGAS RIDRQTLVQG EVRGALSFMD GGLFASNTIN NSFAIVDTDG FGNIRVLDEN
RLVGRTDSAG QLLVPDLRSY QANHIAIDPN DVPINATLPY ATRDVRPPDR SGVVVKFPIR
ASYGALLRLV DQSGKNLPVG SVATLQKTGV SVPVGYDGEA YVVNLSPHNR LLVERPDGQR
CIVTFTYHPI AGTIPSIGPL TCRKDGP
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