Gene Lferr_0002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_0002 
Symbol 
ID6875951 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp1894 
End bp2991 
Gene Length1098 bp 
Protein Length365 aa 
Translation table11 
GC content57% 
IMG OID642787881 
ProductDNA polymerase III, beta subunit 
Protein accessionYP_002218471 
Protein GI198282150 
COG category[L] Replication, recombination and repair 
COG ID[COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) 
TIGRFAM ID[TIGR00663] DNA polymerase III, beta subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value3.18907e-05 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000394754 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAAAATCA CCATAGATCG TGAAGATCTT CTCCCCATCC TGGCGAATAT GGCCAATATT 
GCCGACCGGC GCCCGGTACA ACCAATTCTG GCCCATGTCC TTATCGAAGC CGCAGGCCAA
CACTGCCGCT TCGTCGCTAC CGATCTGGAA GTCCAGCTTT CCGCCGACCT GGATCACCCG
GTAGATGCGC CGGGCACCTG CGCCGTCCCC GCTCGCAAAC TCTATGACAT CTGTCGGGCG
TTACCCGAAC ACACCCCCAT AGAATTTCAT AAAGACGGCG AAAAGCTGCT CCTGAAGGCC
GCCAAGAGCC GCTTTACCCT GCACATATTA CCCGCCGATC AATTTCCGTA CCTCAGTACC
CACAGCAGCC TCTGTCAGGG TAACGGCAAT GCCAAAACCT TTCGCGAAGC GCTCGCCGTC
GTCGCCAACA CCATGGCACA GAACGACGCA AGGCTTTTTC TGAACGGCGT CCTCATCGAG
GTGGAAGGTC AGGAGCTGCG TCTCGTAGCC ACCGACGGTC ATCGTCTGGC CATGATGACC
CTGCCTTTTG CCAGCAGCCT GGAAAGCGGA AGCTACCAGG CCATACTGCC GCGCAAAGCC
GTCCTCGAAC TACTGCGGAT TCTCGATGAC GGCGACATCG TTCTGGAAAT GTCGGATGCC
AGCTTTCTGC TCAATGATGG TACACAGCAG TTCGCCTGCA AGCTCATCGA CGCCAAATAT
CCCGATTACC GCCGGGTCAT CCCCCAGGGA CACCCCCGCT TCGCCATACT GGACCGCCAG
GCCTTCAAAA GTGCCTTGCA GCAGAGCGAC GTTCTGGTCA GCGACCGTAA TCCGACCACC
CATCTTCATC TGGAAAACGA CCAGATGACC CTGCGCAGCC GCAATGAGGA GCAGGAGGAA
GGCGAAATCC AGATTCCCGT CGAGTATCAG GGTGACACCC TGGATATCGC TTTCAACAGC
CGCTATCTGA CGGACACGAC CCAGATATTC CCCCAGGAAA GTTTGCGGAT GCGGGTCAAG
GACAGCGACA GCAGCGCCGT TTTCACCCCG GTAGACAGCA ATAATCCCCT GTATATCATC
ATGCCCGTTC GTCTTTGA
 
Protein sequence
MKITIDREDL LPILANMANI ADRRPVQPIL AHVLIEAAGQ HCRFVATDLE VQLSADLDHP 
VDAPGTCAVP ARKLYDICRA LPEHTPIEFH KDGEKLLLKA AKSRFTLHIL PADQFPYLST
HSSLCQGNGN AKTFREALAV VANTMAQNDA RLFLNGVLIE VEGQELRLVA TDGHRLAMMT
LPFASSLESG SYQAILPRKA VLELLRILDD GDIVLEMSDA SFLLNDGTQQ FACKLIDAKY
PDYRRVIPQG HPRFAILDRQ AFKSALQQSD VLVSDRNPTT HLHLENDQMT LRSRNEEQEE
GEIQIPVEYQ GDTLDIAFNS RYLTDTTQIF PQESLRMRVK DSDSSAVFTP VDSNNPLYII
MPVRL