| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A4882 |
|---|
| Symbol | |
|---|
| ID | 6872565 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | + |
|---|
| Start bp | 4728963 |
|---|
| End bp | 4731407 |
|---|
| Gene Length | 2445 bp |
|---|
| Protein Length | 814 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 642787763 |
|---|
| Product | outer membrane fimbrial usher protein |
|---|
| Protein accession | YP_002218356 |
|---|
| Protein GI | 198243755 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3188] P pilus assembly protein, porin PapC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 0.00405826 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAA CCACAATTAC TCTATTTGTT TTAACCAGTG TATTTCACTC TGGAAATGTT
TTCTCCAGAC AATATAATTT CGACTATGGA AGTTTGAGTC TTCCTCCCGG TGAGAATGCA
TCTTTTCTAA GTGTTGAAAC GCTTCCTGGT AATTATGTTG TTGATGTATA TTTGAATAAT
CAGTTAAAAG AAACTACTGA GTTGTATTTC AAATCAATGA CTCAGACTCT AGAACCATGC
TTAACAAAAG AAAAACTTAT AAAGTATGGG ATCGCCATCC AGGAGCTTCA TGGGTTGCAG
TTTGATAATG AACAATGCGT TCTCTTAGAG CATTCTCCTC TTAAATATAC TTATAACGCG
GCTAACCAAA GTTTGCTTTT AAATGCACCA TCTAAAATTC TATCTCCAAT AGACAGTGAA
ATTGCTGATG AAAATATCTG GGATGATGGC ATTAACGCTT TTCTTTTAAA TTACAGAGCT
AATTATTTGC ATTCTAAGGT TGGAGGAGAA GATTCATACT TTGGTCAAAT TCAACCTGGT
TTTAATTTTG GTCCCTGGCG GCTAAGGAAT CTATCATCTT GGCAAAACTT GTCAAGCGAA
AAAAAATTTG AATCAGCATA TATTTATGCT GAGCGAGGTT TAAAAAAAAT AAAGAGCAAA
CTAACAGTTG GGGACAAATA TACCAGTGCA GATTTATTCG ATAGCGTACC ATTTAGAGGC
TTTTCTTTAA ATAAAGATGA AAGTATGATA CCTTTCTCAC AGAGAACATA TTATCCAACA
ATACGTGGTA TTGCGAAAAC CAATGCGACT GTAGAAGTAA GACAAAATGG ATACTTGATA
TATTCTACTT CAGTCCCCCC CGGGCAATTC GAGATAGGTA GAGAACAAAT TGCTGATCTT
GGTGTTGGGG TTGGGGTTCT TGATGTTAGC ATTTATGAAA AAAATGGGCA GGTCCAAAAC
TATACAGTGC CATATTCAAC TCCTGTATTA TCTTTGCCTG ATGGATATTC TAAATATAGT
GTAACTATTG GTAGATACAG GGAGGTTAAC AATGATTATA TCGATCCTGT TTTTTTTGAA
GGGACTTATA TATATGGTCT GCCTTATGGG TTTACTTTAT TTGGTGGAGT GCAATGGGTA
AATATTTATA ATTCATATGC CATAGGCGCA AGTAAAGATA TTGGTGAGTA TGGTGCTCTG
TCTTTTGACT GGAAAACATC TGTTTCGAAG ACTGATACAT CCAATGAAAA TGGTCATGCA
TATGGGATTA GATACAATAA AAATATCGCT CAGACAAACA CCGAAGTATC TTTGGCTAGT
CATTACTATT ATTCGAAAAA TTATAGAACT TTTTCTGAAG CAATTCATAG TAGCGAGCAT
GATGAATTTT ACGATAAAAA TAAGAAATCA ACAACCTCTA TGTTATTAAG TCAGGCATTA
GGATCTCTGG GTTCTGTTAA CTTAAGCTAC AATTATGATA AATATTGGAA ACATGAAGGT
AAAAAATCAA TAATTGCTAG TTATGGGAAG AATTTAAATG GTGTTTCGTT ATCGCTTTCA
TATACGAAAA GTACATCAAA GATTAGTGAA GAAAATGAAG ATTTATTCAG TTTTCTACTC
AGTGTACCTT TGCAAAAACT TACAAATCAT GAAATGTATG CTACATATCA AAACTCATCC
TCTTCAAAGC ATGATATGAA TCATGATTTA GGTATTACTG GTGTGGCATT TAATAGCCAA
TTGACATGGC AAGCAAGAGG GCAAATAGAA GATAAATCGA AAAATCAAAA GGCTACATTT
TTAAATGCTT CTTGGCGAGG TACTTATGGG GAGATAGGAG CAAACTATAG TCATAATGAA
ATAAATCGTG ATATTGGGAT GAATGTTTCT GGTGGGGTGA TTGCTCATTC ATCAGGAATT
ACGTTTGGTC AGAGTATATC GGATACTGCT GCACTGGTAG AGGCTAAAGG TGTAAGTGGG
GCAAAAGTTC TGGGCCTACC AGGTGTTAGA ACCGATTTTA GAGGCTATAC AATATCCAGT
TATCTTACTC CATATATGAA TAACTTCATA TCTATAGATC CAACAACGTT ACCAATAAAT
ACGGATATTA GGCAAACTGA TATTCAAGTA GTTCCTACCG AAGGTGCTAT TGTAAAAGCT
GTATATAAAA CAAGCGTGGG TACTAATGCA TTAATTAGAA TTACAAGAAC AAATGGAAAG
CCACTAGCTC TTGGCACAGT TCTTTCACTT AAGAATAATG ATGGAGTAAT CCAATCAACA
TCTATTGTTG GCGAAGATGG TCAGGCATAT GTATCTGGAT TGTCAGGAGT GCAAAAATTA
ATCGCTTCGT GGGGGAATAA GCCCTCCGAT ACTTGTACAG TTTTTTACTC TCTTCCCGAT
AAAAACAAAG GTCAGATTAG CTTTTTAAAT GGAGTGTGCA AATGA
|
|---|
| Protein sequence | MKKTTITLFV LTSVFHSGNV FSRQYNFDYG SLSLPPGENA SFLSVETLPG NYVVDVYLNN
QLKETTELYF KSMTQTLEPC LTKEKLIKYG IAIQELHGLQ FDNEQCVLLE HSPLKYTYNA
ANQSLLLNAP SKILSPIDSE IADENIWDDG INAFLLNYRA NYLHSKVGGE DSYFGQIQPG
FNFGPWRLRN LSSWQNLSSE KKFESAYIYA ERGLKKIKSK LTVGDKYTSA DLFDSVPFRG
FSLNKDESMI PFSQRTYYPT IRGIAKTNAT VEVRQNGYLI YSTSVPPGQF EIGREQIADL
GVGVGVLDVS IYEKNGQVQN YTVPYSTPVL SLPDGYSKYS VTIGRYREVN NDYIDPVFFE
GTYIYGLPYG FTLFGGVQWV NIYNSYAIGA SKDIGEYGAL SFDWKTSVSK TDTSNENGHA
YGIRYNKNIA QTNTEVSLAS HYYYSKNYRT FSEAIHSSEH DEFYDKNKKS TTSMLLSQAL
GSLGSVNLSY NYDKYWKHEG KKSIIASYGK NLNGVSLSLS YTKSTSKISE ENEDLFSFLL
SVPLQKLTNH EMYATYQNSS SSKHDMNHDL GITGVAFNSQ LTWQARGQIE DKSKNQKATF
LNASWRGTYG EIGANYSHNE INRDIGMNVS GGVIAHSSGI TFGQSISDTA ALVEAKGVSG
AKVLGLPGVR TDFRGYTISS YLTPYMNNFI SIDPTTLPIN TDIRQTDIQV VPTEGAIVKA
VYKTSVGTNA LIRITRTNGK PLALGTVLSL KNNDGVIQST SIVGEDGQAY VSGLSGVQKL
IASWGNKPSD TCTVFYSLPD KNKGQISFLN GVCK
|
|---|
| |