Gene SeD_A4747 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A4747 
Symbol 
ID6872402 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp4607310 
End bp4607855 
Gene Length546 bp 
Protein Length181 aa 
Translation table11 
GC content55% 
IMG OID642787640 
Productoligoribonuclease 
Protein accessionYP_002218237 
Protein GI198244671 
COG category[A] RNA processing and modification 
COG ID[COG1949] Oligoribonuclease (3'->5' exoribonuclease) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones4 
Plasmid unclonability p-value0.00828868 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones73 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGCCG ATGAAAACAA CCTGATTTGG ATCGATCTGG AGATGACAGG TCTGGACCCC 
GAGCGCGATC GCATTATTGA GATAGCCACG CTGGTAACGG ATGCCAGCCT GAATATTCTG 
GCGGAAGGGC CGACGATTGC GGTACATCAA TCCGATGCGC AACTGGCGTT AATGGATGAC 
TGGAACGTGC GCACCCATAC CGGCAGCGGC CTGGTAGATC GCGTTAAGGC AAGTACGATG 
GGCGAACGAG ACGCTGAACT GGCGACGATT GAATTTCTGA AAACGTGGGT GCCTGCGGGT 
AAGTCGCCGA TTTGCGGTAA CAGCATCGGT CAGGATCGTC GTTTTCTGTT TAAATATATG 
CCGGAACTGG AGGCCTACTT CCACTATCGC TATCTGGATG TCAGTACGCT CAAGGAACTG 
GCGCGCCGCT GGAAGCCGGA GATTCTGGCC GGCTTTACCA AGCAGGGCAC GCACCAAGCG 
ATGGATGATA TTCGCGAGTC GGTGGCGGAG CTGGCTTACT ACCGCGAGCA TTTCATTAAG 
CTGTGA
 
Protein sequence
MSADENNLIW IDLEMTGLDP ERDRIIEIAT LVTDASLNIL AEGPTIAVHQ SDAQLALMDD 
WNVRTHTGSG LVDRVKASTM GERDAELATI EFLKTWVPAG KSPICGNSIG QDRRFLFKYM 
PELEAYFHYR YLDVSTLKEL ARRWKPEILA GFTKQGTHQA MDDIRESVAE LAYYREHFIK 
L