Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A4695 |
Symbol | fumB |
ID | 6871171 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | - |
Start bp | 4560117 |
End bp | 4561763 |
Gene Length | 1647 bp |
Protein Length | 548 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 642787593 |
Product | fumarate hydratase class I, anaerobic |
Protein accession | YP_002218191 |
Protein GI | 198242592 |
COG category | [C] Energy production and conversion |
COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain [COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region [TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 81 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGAAAA AAGAGTTTAT CTATCAGGCG CCTTTCCCGA TGGGAGAGGA CAAAACAGAG TATTATCTGC TCACCTCCGA TTATGTCAGC GTCAGTGAAT TCAACGGAGA ATCTATCCTC AACGTTGAGC CGCAGGCGTT AACGTTGCTG GCTCAGCAGG CCTTCCATGA TGCGTCTTTT ATGCTCCGTC CTGAACACCA GCAGCAAGTC GCCGCCATTC TCCATGACCC CGAAGCCAGC GAAAACGACA AATATGTGGC GTTGCAATTC CTGAGAAACT CCGAAATCGC CGCCAAAGGC ATTCTGCCGA CCTGCCAGGA TACCGGCACG GCGATTATCA TGGGTAAAAA AGGCCAACGC GTCTGGACGG GCGGCGGCGA TGAAGCCGCG CTCTCCAAAG GCGTGTTTAA TACCTATATC GAAGATAACC TGCGCTACTC GCAGAACGCA CCGCTGGATA TGTACAAAGA GGTCAATACC GGCAGCAACC TGCCAGCGCA AATCGATCTC TATGCCGTCG ATGGCGACGA GTACAAGTTC CTTTGCGTGG CGAAAGGCGG CGGTTCAGCA AACAAAACGT ATCTCTATCA GGAGACCAAA GCGCTGCTCA CCCCAGGCAA GCTGAAAAAC TTCCTCGTTG AGAAAATGCG CACGCTGGGC ACCGCAGCCT GTCCGCCATA CCATATCGCC TTTGTCATTG GCGGCACCTC GGCGGAAAGC ACGCTGAAAA CCGTTAAGCT CGCCAGCACC CACTATTACG ACGCGCTGCC GACGGAAGGT AACGAGCACG GCCAGGCATT CCGCGATCTC CGCCTGGAAC AGGAACTGCT GGAAGAAGCG CAAAAACTTG GCCTCGGCGC CCAGTTCGGC GGGAAATATT TCGCCCACGA TATTCGCGTA ATTCGCCTGC CGCGTCACGG CGCTTCCTGT CCGGTGGGGA TGGGCGTCTC CTGCTCGGCC GACCGTAACA TCAAAGCGAA AATCAACCGC GAAGGCATCT GGATCGAAAA ACTGGAACAC AATCCGGGCC AGTATATTCC GCCAGCGCTG CGTCAGGCGG GCGAAGGCGA CGCGGTGAAA GTCGATCTCA ACCGTTCGAT GAAAGAGATC CTCGCCCAGC TATCGCAGTA CCCGGTCTCG ACTCGCCTGT CGCTGACGGG CACCATTATC GTAGGTCGCG ATATCGCCCA CGCGAAGCTA AAAGAGCGTA TTGAATCCGG CGAAGACCTG CCGCAGTATA TTAAAGACCA TCCCATCTAT TACGCAGGTC CGGCAAAAAC CCCGGCAGGT TATCCATCTG GTTCATTAGG CCCCACCACC GCAGGCCGAA TGGACTCTTA TGTCGATCTA CTGCAATCCC ACGGCGGCAG TATGATCATG CTGGCGAAAG GCAACCGTAG TCAGCAGGTC ACGGATGCCT GTAAAAAACA TGGCGGCTTT TATTTGGGCA GTATCGGCGG CCCGGCGGCG GTACTGGCAC AGCAGAGCAT TAAGCATCTG GAGTGCGTCG AGTATCCGGA ACTCGGCATG GAAGCTATCT GGAAAATTGA AGTAGAAGAT TTCCCGGCCT TTATCCTGGT GGATGACAAA GGCAACGATT TCTTCCAGCA GATTGTCAGC AAACAGTGCG CTAACTGCGC GAAATAA
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Protein sequence | MSKKEFIYQA PFPMGEDKTE YYLLTSDYVS VSEFNGESIL NVEPQALTLL AQQAFHDASF MLRPEHQQQV AAILHDPEAS ENDKYVALQF LRNSEIAAKG ILPTCQDTGT AIIMGKKGQR VWTGGGDEAA LSKGVFNTYI EDNLRYSQNA PLDMYKEVNT GSNLPAQIDL YAVDGDEYKF LCVAKGGGSA NKTYLYQETK ALLTPGKLKN FLVEKMRTLG TAACPPYHIA FVIGGTSAES TLKTVKLAST HYYDALPTEG NEHGQAFRDL RLEQELLEEA QKLGLGAQFG GKYFAHDIRV IRLPRHGASC PVGMGVSCSA DRNIKAKINR EGIWIEKLEH NPGQYIPPAL RQAGEGDAVK VDLNRSMKEI LAQLSQYPVS TRLSLTGTII VGRDIAHAKL KERIESGEDL PQYIKDHPIY YAGPAKTPAG YPSGSLGPTT AGRMDSYVDL LQSHGGSMIM LAKGNRSQQV TDACKKHGGF YLGSIGGPAA VLAQQSIKHL ECVEYPELGM EAIWKIEVED FPAFILVDDK GNDFFQQIVS KQCANCAK
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