Gene SeD_A4280 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A4280 
Symbol 
ID6873528 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp4127522 
End bp4128226 
Gene Length705 bp 
Protein Length234 aa 
Translation table11 
GC content51% 
IMG OID642787210 
ProductGntR family transcriptional regulator 
Protein accessionYP_002217836 
Protein GI198243205 
COG category[K] Transcription 
COG ID[COG2186] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones3 
Plasmid unclonability p-value0.003808 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones66 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTTTAA GCGCACAACA ATTAGCCGCA CAGAAAAATC TATCCTATGT TCTGGCTGAA 
AAGCTGGCGC AGCGGATATT AAAGGGTGAC TACGCCCCCG GTACTATTCT TCCCGGCGAA 
ATAGAACTGG GCGAGCAGTA CGGCGTAAGT CGAACGGCAG TTCGCGAAGC GGTGAAAACG 
TTGACGGCTA AAGGTATGGT GCTACCTCGT CCGCGCATTG GTACGCGGGT GATGCCGCAG 
GGAAACTGGA ACTTTCTGGA TCAAGAGCTG CTGACCTGGT GGATGACGGA AGAAAATTTT 
CATCAGGTGG TAGAGCATTT TCTGGTGATG CGTATTAGCC TGGAGCCGCA AGCCTGCCTG 
CTGGCGGCGA CTCTTGGCAC ACCGGAGCAG AAAGCGCGGC TTAATGCCTT AATGGAAGAG 
ATGGTCGCGC TGAAAAAGCA TTTTAAGCGT GAACGCTGGA TTGAAGTGGA TATGGCGTGG 
CACGAGCATA TCTACGAAAT GAGCGCCAAT CCCTTTCTAA TCTCTTTTGC GACGCTATTT 
CATTCGGTTT ATCACACTTA CTTTACCTCA ATCACCTATA ACGAGGTGGT AAAGCTGGAT 
TTGCACCAGG CCATTGTTGA TGCCATCGCT GATGGCGACG GCGAACGCGC TTTCCAGGCC 
TGCCAGGCGT TGTTAATAGC GCCCAATGAG AGACCAGATA ATTAA
 
Protein sequence
MPLSAQQLAA QKNLSYVLAE KLAQRILKGD YAPGTILPGE IELGEQYGVS RTAVREAVKT 
LTAKGMVLPR PRIGTRVMPQ GNWNFLDQEL LTWWMTEENF HQVVEHFLVM RISLEPQACL 
LAATLGTPEQ KARLNALMEE MVALKKHFKR ERWIEVDMAW HEHIYEMSAN PFLISFATLF 
HSVYHTYFTS ITYNEVVKLD LHQAIVDAIA DGDGERAFQA CQALLIAPNE RPDN