Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A4234 |
Symbol | trmE |
ID | 6872595 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | + |
Start bp | 4081219 |
End bp | 4082622 |
Gene Length | 1404 bp |
Protein Length | 467 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 642787166 |
Product | tRNA modification GTPase TrmE |
Protein accession | YP_002217792 |
Protein GI | 198243069 |
COG category | [R] General function prediction only |
COG ID | [COG0486] Predicted GTPase |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR00450] tRNA modification GTPase TrmE |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 82 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACCGCCT TTTTTATTGC AACAAAGTTG AGACTAACCA TGAGCCATAA CGACACTATC GTCGCCCAGG CAACCCCACC GGGACGCGGT GGCGTGGGTA TCCTGCGTAT CTCTGGTCTG AAAGCGCGCG ACGTTGCGCA AGAGGTGCTG GGCAAGCTGC CGAAGCCGCG CTATGCCGAC TACCTGCCGT TTAAAGACGT TGACGGCAGC GCGCTGGATC AGGGTATTGC GCTGTGGTTC CCCGGCCCGA ACTCCTTCAC CGGTGAAGAT GTGCTGGAGC TACAAGGGCA CGGCGGTCCG GTGATCCTGG ACCTGCTGTT AAAACGTATC CTGACGCTTC CAGGCGTGCG CATTGCCCGA CCGGGCGAGT TCTCCGAGCG AGCGTTCCTC AACGATAAGC TCGATTTAGC CCAAGCAGAA GCCATTGCCG ACCTGATCGA TGCCAGTTCC GAACAGGCGG CGCGTTCGGC GCTAAACTCG TTACAGGGGG CATTTTCCGC CCGCGTTAAC CACCTTGTGG AAGCACTTAC TCACCTGCGA ATCTACGTCG AAGCGGCTAT CGATTTTCCG GATGAGGAGA TCGACTTTCT CTCTGACGGC AAAATCGAAG CGCAGCTCAA TGGTGTCATC GCCGATCTTG ACGCCGTGCG CACCGAAGCG CGCCAGGGCA GCCTGCTGCG CGAAGGGATG AAGGTAGTGA TTGCCGGACG CCCGAATGCC GGGAAATCCA GCCTGCTGAA TGCGCTGGCA GGCCGTGAAG CGGCCATTGT TACCGATATC GCCGGCACCA CGCGCGACGT GTTGCGCGAG CATATTCACA TCGACGGGAT GCCGCTGCAT ATCATCGATA CCGCCGGACT GCGCGACGCC AGCGACGAAG TTGAGCGTAT CGGCATCGAA CGCGCCTGGC AGGAGATTGA ACAGGCCGAT CGCGTGCTGT TTATGGTGGA TGGCACCACG ACGGACGCCG TTGACCCTGC CGACATCTGG CCGGACTTTA TCGCCCGTCT GCCCAAAAAT CTACCGATTA CCGTGGTACG TAACAAGGCG GATATCACCG GCGAAACGTT GGGTATTAGT GAAGTAAACG GTCACTCACT GGTTCGCCTC TCGGCGCGTA CCGGCGAAGG CGTCGACGTG TTGCGTAACC ACCTCAAGCA GAGCATGGGG TTTGATACCA ATATGGAAGG CGGCTTCCTG GCCCGCCGCC GTCACCTACA GGCGCTGGCG GAAGCCGCTG AACACCTTGA GCAGGGCAAA GCGCAGCTAT TAGGCGCATG GGCGGGGGAA CTGCTGGCGG AAGAGTTGCG CCTGGCGCAG CAAAGCTTAA GCGAGATTAC CGGCGAGTTT ACCTCCGACG ACCTGCTGGG ACGGATTTTC TCCAGCTTCT GTATCGGCAA ATAA
|
Protein sequence | MTAFFIATKL RLTMSHNDTI VAQATPPGRG GVGILRISGL KARDVAQEVL GKLPKPRYAD YLPFKDVDGS ALDQGIALWF PGPNSFTGED VLELQGHGGP VILDLLLKRI LTLPGVRIAR PGEFSERAFL NDKLDLAQAE AIADLIDASS EQAARSALNS LQGAFSARVN HLVEALTHLR IYVEAAIDFP DEEIDFLSDG KIEAQLNGVI ADLDAVRTEA RQGSLLREGM KVVIAGRPNA GKSSLLNALA GREAAIVTDI AGTTRDVLRE HIHIDGMPLH IIDTAGLRDA SDEVERIGIE RAWQEIEQAD RVLFMVDGTT TDAVDPADIW PDFIARLPKN LPITVVRNKA DITGETLGIS EVNGHSLVRL SARTGEGVDV LRNHLKQSMG FDTNMEGGFL ARRRHLQALA EAAEHLEQGK AQLLGAWAGE LLAEELRLAQ QSLSEITGEF TSDDLLGRIF SSFCIGK
|
| |